This paper presents a new atlas-based segmentation framework for the delineation of major regions in magnetic resonance brain images employing an atlas of the global topological structure as well as a statistical atlas of the regions of interest. A segmentation technique using fast marching methods and tissue classification is proposed that guarantees strict topological equivalence between the ...

In this paper the various approaches of EPID-based in vivo IMRT and VMAT dose verification, and their clinical implementation, are described. It will be shown that EPID-based in vivo dosimetry plays an important role in the total chain of verification procedures in a radiotherapy department. EPID-based dosimetry, in combination with in-room imaging, is a fast and accurate tool for 3D in vivo ve...

Introduction: In recent years, voxel based analysis (VBA) studies have demonstrated the potential of diffusion tensor imaging (DTI) to detect white matter (WM) damage in patients with various neurological or psychiatric disorders. In VBA, all DTI data sets are transformed to an atlas or template, whereafter the diffusion measures of control subjects and patients are evaluated in each voxel. In ...

The purpose of this study was to develop dosimetry verification procedures for volumetric-modulated arc therapy (VMAT)-based total marrow irradiation (TMI). The VMAT based TMI plans were generated for three patients: one child and two adults. The planning target volume (PTV) was defined as bony skeleton, from head to mid-femur, with a 3 mm margin. The plan strategy similar to published studies ...

Atlases of key white matter (WM) structures in humans are widely available, and are very useful for region of interest (ROI)-based analyses of WM properties. There are histology-based atlases of cortical areas in the rhesus macaque, but none currently of specific WM structures. Since ROI-based analysis of WM pathways is also useful in studies using rhesus diffusion tensor imaging (DTI) data, we...

A good abdominal probabilistic atlas can provide important information to guide segmentation and registration applications in the abdomen. Here we build and test probabilistic atlases using 24 abdominal CT scans with available expert manual segmentations. Atlases are built by picking a target and mapping other training scans onto that target and then summing the results into one probabilistic a...

We present commissioning and comprehensive evaluation for ArcCHECK as a QA equipment for volumetric-modulated arc therapy (VMAT), using the 6 MV photon beam with and without the flattening filter, and the SNC patient software (version 6.2). In addition to commissioning involving absolute dose calibration, array calibration, and PMMA density verification, ArcCHECK was evaluated for its response ...

This paper presents a fully automated brain segmentation method that has been applied to a group of patients with infratentorial ependymoma. The purpose of the study was to test the hypothesis that fully-automated atlas-based segmentation methods provide useful normal tissue dosimetry from which dose-volume modeling may be performed in a manner equivalent to dose-volume data obtained from manua...

The objective of this study was to identify morphological measurements that best distinguish Moroccan Barcha and Atlas goat breeds. Ten measurements (body weight - BW, body length - BL, heart girth - HG, withers height - WH, rump height - WH, back length - BAL, neck length - NL, head length - HL, ear length - EL, and ear width - EW) of 876 adult animals of both sexes (547 Barcha and 329 Atlas) ...

Volumetric, slice-based, 3-D atlases are invaluable tools for understanding complex cortical convolutions. We present a simple scheme to convert a slice-based atlas to a conceptual surface atlas that is easier to visualize and understand. The key idea is to unfold each slice into a one-dimensional vector, and concatenate a succession of these vectors--while maintaining as much spatial contiguit...