Meandering channels formed by geophysical flows (e.g., rivers and seafloor turbidity currents) include the most extensive sediment transport systems on Earth. Previous measurements from rivers show how helical flow at meander bends plays a key role in sediment transport and deposition. Turbidity currents differ from rivers in both density and velocity profiles. These differences, and the lack o...

Helical symmetry is often encountered in nature and thus also in molecular dynamics (MD) simulations. In many cases, an approximation based on infinite helical periodicity can save a significant amount of computer time. However, standard simulations with the usual periodic boundary conditions (PBC) are not easily compatible with it. In the present study, we propose and investigate an algorithm ...

Some of the earliest methods for three-dimensional reconstruction from electron microscopic images were developed for helical objects. Single-particle methods have been used with great success for the three-dimensional reconstruction of macromolecular assemblies that have no internal symmetry or closed point group symmetries. An approach is presented for the application of single-particle metho...

A three-dimensional (3D) weighted helical cone beam filtered backprojection (CB-FBP) algorithm (namely, original 3D weighted helical CB-FBP algorithm) has already been proposed to reconstruct images from the projection data acquired along a helical trajectory in angular ranges up to [0, 2 π]. However, an overscan is usually employed in the clinic to reconstruct tomographic images with superior ...

Three-dimensional vortex-method simulations are made of a round jet forced by axisymmet-ric, helical and multiple disturbances. The multiple disturbances are combinations of two helical modes rotating in the opposite direction. The present simulations demonstrate the evolution of large-scale vortex structures in the forced jet. Results of the simulations are in reasonable agreement with availab...

In 1946, John D. Kraus invented the helical-beam antenna (or axialmode helix).1 Commencing with Kraus’s correct hypothesis that travelling-wave structures then used in electromagnetic devices would make efficient antennas, the helix antenna has proven to be the radiator of choice for many radio astronomy and spacescience applications. The helical antenna has been carried to the Moon and Mars, a...

Assemblies with helical symmetry can be conveniently formulated in many distinct ways. Here, a new convention is presented which unifies the two most commonly used helical systems for generating helical assemblies from asymmetric units determined by X-ray fibre diffraction and EM imaging. A helical assembly is viewed as being composed of identical repetitive units in a one- or two-dimensional l...

While antimicrobial peptides (AMPs) have been widely investigated as potential therapeutics, high-resolution structures obtained under biologically relevant conditions are lacking. Here, the high-resolution structures of the homologous 22-residue long AMPs piscidin 1 (p1) and piscidin 3 (p3) are determined in fluid-phase 3:1 phosphatidylcholine/phosphatidylglycerol (PC/PG) and 1:1 phosphatidyle...

Alpha-helical transmembrane proteins mediate many key biological processes and represent 20–30% of all genes in many organisms. Due to the difficulties in experimentally determining their high-resolution 3D structure, computational methods that predict their topology (transmembrane helical segments and their orientation) are essential in advancing the understanding of membrane proteins’ structu...