نتایج جستجو برای: retrotransposons

تعداد نتایج: 2591  

Journal: :Bioinformatics 2003
Eugene M. McCarthy John F. McDonald

MOTIVATION Long terminal repeat (LTR) retrotransposons constitute a substantial fraction of most eukaryotic genomes and are believed to have a significant impact on genome structure and function. Conventional methods used to search for LTR retrotransposons in genome databases are labor intensive. We present an efficient, reliable and automated method to identify and analyze members of this impo...

Journal: :Gene 2003
Josep M Casacuberta Néstor Santiago

Transposons are genetic elements that can move, and sometimes spread, within genomes, and that constitute an important fraction of eukaryote genomes. Two types of transposons, long terminal repeat (LTR)-retrotransposons and miniature inverted-repeat transposable elements (MITEs), are highly represented in plant genomes, and can account for as much as 50-80% of the total DNA content. In the last...

2008
Mehmet Baki Yokeş Ahmed Mansour

Genomic retrotransposons are major genomic components in most eukaryotic organisms. Their abundance in the genome is generally correlated with genome size. These elements spread throughout the genome by a process termed retro-transposition consisting of transcription, reverse transcription and reinsertion of the copied element into a new genomic location. The target sites are relatively unspeci...

2013
Fiorella C. Grandi Wenfeng An

The human genome is laden with both non-LTR (long-terminal repeat) retrotransposons and microsatellite repeats. Both types of sequences are able to, either actively or passively, mutagenize the genomes of human individuals and are therefore poised to dynamically alter the human genomic landscape across generations. Non-LTR retrotransposons, such as L1 and Alu, are a major source of new microsat...

2012
Vladimir S. Mashanov Olga R. Zueva José E. García-Arrarás

Research on the involvement of retroelements in developmental processes has been gaining momentum recently; however, most of the studies published so far have been focused on embryonic development. This commentary presents two recent papers, which document significant changes in transcriptional activity of retroelements in two different model systems, salamander limb regeneration and regenerati...

2017
Marie MacLennan Marta García-Cañadas Judith Reichmann Elena Khazina Gabriele Wagner Christopher J Playfoot Carmen Salvador-Palomeque Abigail R Mann Paula Peressini Laura Sanchez Karen Dobie David Read Chao-Chun Hung Ragnhild Eskeland Richard R Meehan Oliver Weichenrieder Jose Luis García-Pérez Ian R Adams

Mobilization of retrotransposons to new genomic locations is a significant driver of mammalian genome evolution, but these mutagenic events can also cause genetic disorders. In humans, retrotransposon mobilization is mediated primarily by proteins encoded by LINE-1 (L1) retrotransposons, which mobilize in pluripotent cells early in development. Here we show that TEX19.1, which is induced by dev...

Journal: :The Open Virology Journal 2008
Roxane M Barthélémy Jean-Paul Casanova Eric Faure

Chaetognaths constitute a small marine phylum exhibiting several characteristic which are highly unusual in animal genomes, including two classes of both rRNA and protein ribosomal genes. As in this phylum presence of retrovirus-like elements has never been documented, analysis of a published expressed sequence tag (EST) collection of the chaetognath Spadella cephaloptera has been made. Twelve ...

2012
Inmaculada Hernández-Pinzón Marta Cifuentes Elizabeth Hénaff Néstor Santiago M. Lluïsa Espinás Josep M. Casacuberta

Retrotransposons' high capacity for mutagenesis is a threat that genomes need to control tightly. Transcriptional gene silencing is a general and highly effective control of retrotransposon expression. Yet, some retrotransposons manage to transpose and proliferate in plant genomes, suggesting that, as shown for plant viruses, retrotransposons can escape silencing. However no evidence of retrotr...

Journal: :Development 2013
Ai Khim Lim Chanchao Lorthongpanich Ting Gang Chew Chin Wee Godwin Tan Yan Ting Shue Sathish Balu Natalia Gounko Satomi Kuramochi-Miyagawa Martin M Matzuk Shinichiro Chuma Daniel M Messerschmidt Davor Solter Barbara B Knowles

Mobilization of endogenous retrotransposons can destabilize the genome, an imminent danger during epigenetic reprogramming of cells in the germline. The P-element-induced wimpy testis (PIWI)-interacting RNA (piRNA) pathway is known to silence retrotransposons in the mouse testes. Several piRNA pathway components localize to the unique, germline structure known as the nuage. In this study, we su...

Journal: :Molecular Biology and Evolution 2001

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