نتایج جستجو برای: throughput nucleotide sequencing

تعداد نتایج: 307622  

2017
Soohong Kim Joachim De Jonghe Anthony B Kulesa David Feldman Tommi Vatanen Roby P Bhattacharyya Brittany Berdy James Gomez Jill Nolan Slava Epstein Paul C Blainey

Low-cost shotgun DNA sequencing is transforming the microbial sciences. Sequencing instruments are so effective that sample preparation is now the key limiting factor. Here, we introduce a microfluidic sample preparation platform that integrates the key steps in cells to sequence library sample preparation for up to 96 samples and reduces DNA input requirements 100-fold while maintaining or imp...

2012
Stéphane Deschamps Victor Llaca Gregory D. May

The advent of next-generation DNA sequencing (NGS) technologies has led to the development of rapid genome-wide Single Nucleotide Polymorphism (SNP) detection applications in various plant species. Recent improvements in sequencing throughput combined with an overall decrease in costs per gigabase of sequence is allowing NGS to be applied to not only the evaluation of small subsets of parental ...

Journal: :Journal of computer science and systems biology 2008
Neil A Miller Stephen F Kingsmore Andrew Farmer Raymond J Langley Joann Mudge John A Crow Alvaro J Gonzalez Faye D Schilkey Ryan J Kim Jennifer van Velkinburgh Gregory D May C Forrest Black M Kathy Myers John P Utsey Nicholas S Frost David J Sugarbaker Raphael Bueno Stephen R Gullans Susan M Baxter Steve W Day Ernest F Retzel

High-throughput DNA sequencing has enabled systems biology to begin to address areas in health, agricultural and basic biological research. Concomitant with the opportunities is an absolute necessity to manage significant volumes of high-dimensional and inter-related data and analysis. Alpheus is an analysis pipeline, database and visualization software for use with massively parallel DNA seque...

Hisham Altayb, Intisar Elhag Elrayah Mohamed Ahmed Salih Muataz Mohmed Eldirdery Nadir Abuzeid, Najem Aldin Mohammed Osman Nihad Mohammed Elhaj Yassir Mahgoub Mohamed

Staphylococcus aureus carrying PVL gene remain major health problem associated with highly virulent infections. Characterization of such gene is important to know the impact and the functional significance of nucleotide variations. PCR and standard sequencing were performed for twelve Sudanese strains from different sources. Protein structures prediction, modeling and physiochemical analysis we...

Journal: :The Plant Journal 2007
W Brad Barbazuk Scott J Emrich Hsin D Chen Li Li Patrick S Schnable

A massively parallel pyro-sequencing technology commercialized by 454 Life Sciences Corporation was used to sequence the transcriptomes of shoot apical meristems isolated from two inbred lines of maize using laser capture microdissection (LCM). A computational pipeline that uses the POLYBAYES polymorphism detection system was adapted for 454 ESTs and used to detect SNPs (single nucleotide polym...

Journal: :Genome research 2003
Raymond D Miller Shenghui Duan Elizabeth G Lovins Ellen F Kloss Pui-Yan Kwok

Targeted resequencing of genomic DNA from organisms such as humans is an important tool enabling experimental access to variation within the species and between similar species. Taking full advantage of the reference genome sequences in designing robust, specific PCR assays and using stringent conditions, resequencing can be done efficiently without purification of the PCR product. By using a 1...

2015
Dadakhalandar Doddamani Aamir W. Khan A. V. S. K. Mohan Katta Gaurav Agarwal Mahendar Thudi Pradeep Ruperao David Edwards Rajeev K. Varshney

Molecular markers are valuable tools for breeders to help accelerate crop improvement. High throughput sequencing technologies facilitate the discovery of large-scale variations such as single nucleotide polymorphisms (SNPs) and simple sequence repeats (SSRs). Sequencing of chickpea genome along with re-sequencing of several chickpea lines has enabled the discovery of 4.4 million variations inc...

Journal: :Plant and Soil 2022

Soil bacteria comprise the largest number of soil microorganisms and play an important role in moso bamboo (Phyllostachys edulis) stumps decay; however, characteristics bacterial communities inside outside these remain unclear. The Phyllostachys edulis were analyzed under three different levels decay using high-throughput sequencing technology. abundance operational taxonomic units, diversity i...

Journal: :PloS one 2015
Andrew E Christie Megan Chi Tess J Lameyer Micah G Pascual Devlin N Shea Meredith E Stanhope David J Schulz Patsy S Dickinson

Peptides are the largest and most diverse class of molecules used for neurochemical communication, playing key roles in the control of essentially all aspects of physiology and behavior. The American lobster, Homarus americanus, is a crustacean of commercial and biomedical importance; lobster growth and reproduction are under neuropeptidergic control, and portions of the lobster nervous system ...

Journal: :Orphanet journal of rare diseases 2016
Nadège Calmels Géraldine Greff Cathy Obringer Nadine Kempf Claire Gasnier Julien Tarabeux Marguerite Miguet Geneviève Baujat Didier Bessis Patricia Bretones Anne Cavau Béatrice Digeon Martine Doco-Fenzy Bérénice Doray François Feillet Jesus Gardeazabal Blanca Gener Sophie Julia Isabel Llano-Rivas Artur Mazur Caroline Michot Florence Renaldo-Robin Massimiliano Rossi Pascal Sabouraud Boris Keren Christel Depienne Jean Muller Jean-Louis Mandel Vincent Laugel

BACKGROUND Deficient nucleotide excision repair (NER) activity causes a variety of autosomal recessive diseases including xeroderma pigmentosum (XP) a disorder which pre-disposes to skin cancer, and the severe multisystem condition known as Cockayne syndrome (CS). In view of the clinical overlap between NER-related disorders, as well as the existence of multiple phenotypes and the numerous gene...

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