Snapmelon (Cucumis melo var. momordica) is native to India and many of its accessions have been used as source for disease and insect pest resistance, worldwide. Inter simple sequence repeat (ISSR) markers were used to evaluate intra-specific genetic diversity among twenty-two snapmelon accessions, variable for fruit cracking, peeling patterns, fruit shape, and flesh colour. Of the 32 ISSR mark...

BACKGROUND To evaluate genetic variation, population structure, and the extent of linkage disequilibrium (LD), 134 switchgrass (Panicum virgatum L.) samples were analyzed with 51 markers, including 16 ISSRs, 20 SCoTs, and 15 EST-SSRs. RESULTS In this study, a high level of genetic variation was observed in the switchgrass samples and they had an average Nei's gene diversity index (H) of 0.311...

A phylogenetic tree is a visual diagram of the relationship between a set of biological species. The scientists usually use it to analyze many characteristics of the species. The distance-matrix methods, such as Unweighted Pair Group Method with Arithmetic Mean and Neighbor Joining, construct a phylogenetic tree by calculating pairwise genetic distances between taxa. These methods have the comp...

Paris polyphylla Sm. is a vulnerable medicinal plant distributed in the Himalayan countries. This has numerous pharmacological benefits, including anticancer, anti-inflammatory, analgesic, and antipyretic properties. The distribution, conservation status, traditional usage of this species are fairly known Nepal. However, its diversity population structure at molecular level unexplored. study an...

Geographical indicator (GI) of crops create a positive impression of the product quality, the environmental virtue and human skill of the area. In the present study, comparative analysis of total seed proteins of Kasuri methi (GI of Kasur, Pakistan) was evaluated with other Trigonella genotypes by SDS-PAGE. Results showed that at protein level Kasuri methi acquired a unique status as a G.I of K...

Estimation of total seed proteins based variation among different Brassica rapa ecotypes is important for crop improvement and efficient utilization. In the present study, variations in total seed proteins among three ecotypes of B. rapa (brown sarson, yellow sarson and toria) were studied. Twenty different genotypes from all the ecotypes were analysed through SDS-PAGE and their phylogenetic re...

Multiple sequence alignment is increasingly important to bioinformatics, with several applications ranging from phylogenetic analyses to domain identification. There are several ways to perform multiple sequence alignment, an important way of which is the progressive alignment approach studied in this work. Progressive alignment involves three steps: find the distance between each pair of seque...

In this paper, we use the EcoRI centromeric satellite DNA family conserved in Sparidae as a taxonomic and a phylogenetic marker. The analyses of 56 monomeric units (187 bp in size) obtained by means of cloning and PCR from 10 sparid species indicate that this repetitive DNA evolves by concerted evolution. Different phylogenetic inference methods, such as neighbor-joining and UPGMA, group the 56...

In this study sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) profiles were analysed and differences were confirmed by a unweighted pair group method with arithmetic average (UPGMA) analysis between bifidobacterial species, such as B. infanis ATCC1567, B. bifidum Bb-12, B. longum KN29, B. catenulatum KD14, and B. animalis BI30. Two dimensional electrophoresis separation pr...

RAPD was used to delineate the hilsa populations sampled from the Ganga, Yamuna, Hooghly, and Narmada Rivers at six different locations. Six degenerate primers were used to generate the fragment patterns from the samples collected. All primers were highly polymorphic and generated high numbers of amplification products. Nei's genetic distances were calculated between locations. The overall aver...