Single-cell RNA sequencing (RNA-Seq) provides rich information about cell types and states. However, it is difficult to capture rare dynamic processes, such as adult neurogenesis, because isolation of rare neurons from adult tissue is challenging and markers for each phase are limited. Here, we develop Div-Seq, which combines scalable single-nucleus RNA-Seq (sNuc-Seq) with pulse labeling of pro...

RNA sequencing (RNA-Seq) is a powerful method for discovering, annotating, and quantifying RNA transcripts that is currently revolutionizing the field of agrigenomics.1–9 RNA-Seq does not require speciesor transcript-specific probes, enabling precise quantification of both known and novel transcripts without prior knowledge. Beyond the measurement of gene expression changes, RNA-Seq can be used...

Interpreting gene expression profiles often involves statistical analysis of large numbers of differentially expressed genes, isoforms, and alternative splicing events at either static or dynamic spectrums. Reduced sequencing costs have made feasible dense time-series analysis of gene expression using RNA-seq; however, statistical methods in the context of temporal RNA-seq data are poorly devel...

MOTIVATION A new protocol for sequencing the messenger RNA in a cell, known as RNA-Seq, generates millions of short sequence fragments in a single run. These fragments, or 'reads', can be used to measure levels of gene expression and to identify novel splice variants of genes. However, current software for aligning RNA-Seq data to a genome relies on known splice junctions and cannot identify no...

تعمج تانايبلا . ةيجهنم ةعجارم تناك ةساردلا هذه :هقیرطلا و ةصالخا تاملكلا لامعتساو تانايبلا ةدعاق يف ثحبلا للاخ نم زجالحا " :یتلاا تناك ةصالخا تاملكلا .ثحبلا یف قمعتلا ريياعلما . " ةطبثلما لماوعلا " و "ءاسنلل ةدلاولا لبق ةياعرلا " لوصو" ٬" یف قمعتلا وةساردلا دعب .OR ،AND تناك ةيقطنلما لماوعلا تلااقم تددحو تضفر ةطبارتم ريغ تلااقم ، هفلتخلما تلااقلما تلااقلما رايتخلاا رايعم .تلااقلما لذل اصخلم اها...

Recently, ultra high-throughput sequencing of RNA (RNA-Seq) has been developed as an approach for analysis of gene expression. By obtaining tens or even hundreds of millions of reads of transcribed sequences, an RNA-Seq experiment can offer a comprehensive survey of the population of genes (transcripts) in any sample of interest. This paper introduces a statistical model for estimating isoform ...

By measuring messenger RNA levels for all genes in a sample, RNA-seq provides an attractive option to characterize the global changes in transcription. RNA-seq is becoming the widely used platform for gene expression profiling. However, real transcription signals in the RNA-seq data are confounded with measurement and sequencing errors and other random biological/technical variation. To extract...

ةــصلاـخلا : سا وه ةنيجهلا ملعتلا ةمظنأ يدحت نإ تامولعملا رداصم دحأ نم ةعبانلا تامولعملا لامعت رخآ ردصم نع ةمجانلا صئاقنلا ةنزاومل . كلذ و ةدعاو ثحب ةهجو لثمي يزمرلا يكبشلا جزملا نإ ةيزمرلا نيتقيرطلا نيب دضاعتلا نلأ ) ةيرظنلا ( ةيكبشلا و ) ةيبيرجتلا ( لآ لامعتسا نم ةيلاعف رثآأ ادح ىلع امهنم ةدحاو . لا اذه فصي ،يزمر يكبش فنصم ةطساوب ةيفرحلا ةيبرعلا غلابملا ىلع فرعتلل اماظن ثحب ،ةيلاملا غلابملا...