Genomic evaluation models can fit additive and dominant SNP effects. Under quantitative genetics theory, additive or "breeding" values of individuals are generated by substitution effects, which involve both "biological" additive and dominant effects of the markers. Dominance deviations include only a portion of the biological dominant effects of the markers. Additive variance includes variatio...

BACKGROUND Genomic selection (GS) is a recent selective breeding method which uses predictive models based on whole-genome molecular markers. Until now, existing studies formulated GS as the problem of modeling an individual's breeding value for a particular trait of interest, i.e., as a regression problem. To assess predictive accuracy of the model, the Pearson correlation between observed and...

The aim of this study was to test how genetic gain for a trait not measured on the nucleus animals could be obtained within a genomic selection pig breeding scheme. Stochastic simulation of a pig breeding program including a breeding nucleus, a multiplier to produce and disseminate semen and a production tier where phenotypes were recorded was performed to test (1) the effect of obtaining pheno...

A crucial step in plant breeding is the selection and combination of parents to form new crosses. Genome-based prediction guides the selection of high-performing parental lines in many crop breeding programs which ensures a high mean performance of progeny. To warrant maximum selection progress, a new cross should also provide a large progeny variance. The usefulness concept as measure of the g...

Soybean is one of the world’s most important crops, offering a stable source of materials for food, feed, industrial, and pharmaceutical applications. Soybean seeds contain a high content of nutritious protein and oil, and assume an important part of traditional foods in many Asian countries, including Japan. They are also abundant in physiologically active metabolites and functional proteins, ...

Genomics-assisted breeding methods have been rapidly developed with novel technologies such as next-generation sequencing, genomic selection and genome-wide association study. However, phenotyping is still time consuming and is a serious bottleneck in genomics-assisted breeding. In this study, we established a high-throughput phenotyping system for sorghum plant height and its response to nitro...

In plant and animal breeding studies a distinction is made between the genetic value (additive plus epistatic genetic effects) and the breeding value (additive genetic effects) of an individual since it is expected that some of the epistatic genetic effects will be lost due to recombination. In this article, we argue that the breeder can take advantage of the epistatic marker effects in regions...

Implementation of genomic selection in sheep breeding provides a number of challenges, compared to dairy cattle, because of the higher genetic diversity between and within sheep breeds, the cost of maintaining reference populations and the limited ability of individual breeders to invest in genotyping. Within this study, we compare theoretical and realized genomic prediction accuracies for trai...

The aim of this study was to evaluate genomic information inclusion in genetic parameter estimation standardized body weight at birth and 240, 365, 450 days age, visual scores for structure, precocity, muscularity, measured as yearlings Nelore cattle. We compared parameters, (co)variance components (estimated from Bayesian inference Gibbs sampling), breeding value accuracies, trends, principal ...