نتایج جستجو برای: genotype iii
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PURPOSE To identify the genetic defect in Spanish families with Usher syndrome (USH) and probable involvement of the CLRN1 gene. METHODS DNA samples of the affected members of our cohort of USH families were tested using an USH genotyping array, and/or genotyped with polymorphic markers specific for the USH3A locus. Based on these previous analyses and clinical findings, CLRN1 was directly se...
I seek to comprehensively evaluate the quality of the Genetic Analysis Workshop 17 (GAW17) data set by examining the accuracy of its genotype calls, which were based on the pilot3 data of the 1000 Genomes Project. Taking advantage of the 1000 Genomes Project/HapMap sample intersect, I compared GAW17 genotype calls to HapMap III, release 2, genotype calls for an individual. These genotype calls ...
Interferon Gamma gamma (IFN-γ) 13-CA-repeats polymorphism is associated with a variety of diseases; here we report its association with nasopharyngeal carcinoma (NPC) metastasis in a retrospective analysis of a cohort of 220 NPC patients in the northern China. The results showed that the distributions of CA13-/CA13-genotypes were significantly higher in the patients with lymph node metastasis (...
Graphical models are a powerful tool in modelling and analysing complex biological associations high-dimensional data. The R-package netgwas implements the recent methodological development on copula graphical to (i) construct linkage maps, (ii) infer disequilibrium networks from genotype data, (iii) detect genotype-phenotype networks. learns structure of ordinal data mixed ordinal-and-continuo...
UNLABELLED Japanese encephalitis (JE) is an arthropod-borne disease associated with the majority of viral encephalitis cases in the Asia-Pacific region. The causative agent, Japanese encephalitis virus (JEV), has been phylogenetically divided into five genotypes. Recent surveillance data indicate that genotype I (GI) is gradually replacing genotype III (GIII) as the dominant genotype. To invest...
Encephalitozoon cuniculi is a microsporidian parasite that infects a wide range of vertebrates, including primates. It has recently emerged as an opportunistic parasite of patients infected with the human immunodeficiency virus. The blue fox (Alopex lagopus; also known as the arctic fox) is one of the most susceptible species for encephalitozoonosis. Here, we report an outbreak of encephalitozo...
A genotype network is a graph in which vertices represent genotypes that have the same phenotype. Edges connect vertices if their corresponding genotypes differ in a single small mutation. Genotype networks are used to study the organization of genotype spaces. They have shed light on the relationship between robustness and evolvability in biological systems as different as RNA macromolecules a...
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