نتایج جستجو برای: microbial profiles

تعداد نتایج: 262005  

Journal: :Tree physiology 1996
Susan J. Grayston Colin D. Campbell

The diversity of microorganisms associated with trees and their different functional capabilities is thought to be a consequence of variation in carbon compounds in the rhizosphere. We used the Biolog(R) system (Biolog Inc., Hayward, CA), a redox-based test, to construct sole carbon source utilization profiles (metabolic fingerprints) of microbial communities from the rhizospheres and rhizoplan...

2017
Arianna Buccioni Grazia Pallara Roberta Pastorelli Letizia Bellini Alice Cappucci Federica Mannelli Sara Minieri Valentina Roscini Stefano Rapaccini Marcello Mele Luciana Giovannetti Carlo Viti Mariano Pauselli

Ruminants derived products have a prominent role in diets and economy worldwide; therefore, the capability to control the rumen microbial ecosystem, for ameliorating their quality, is of fundamental importance in the livestock sector. The aim of this study was to evaluate the effect of dietary supplementation with chestnut and quebracho tannins on microbial community and fatty acid profile, in ...

2013
Matthew G Links Bonnie Chaban Sean M Hemmingsen Kevin Muirhead Janet E Hill

BACKGROUND Formation of operational taxonomic units (OTU) is a common approach to data aggregation in microbial ecology studies based on amplification and sequencing of individual gene targets. The de novo assembly of OTU sequences has been recently demonstrated as an alternative to widely used clustering methods, providing robust information from experimental data alone, without any reliance o...

Journal: :Infection and immunity 2003
Hai Qi Timothy L Denning Lynn Soong

Dendritic cells (DCs) discriminate different microbial pathogens and induce T-cell responses of appropriate effector phenotypes accordingly. Microbial recognition and differentiation are mediated in part by pattern recognition receptors such as Toll-like receptors (TLRs), whereas the development of T-cell effector functions is critically dependent on DC-derived cytokines such as interleukin-12 ...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2006
Valeria Souza Laura Espinosa-Asuar Ana E Escalante Luis E Eguiarte Jack Farmer Larry Forney Lourdes Lloret Juan M Rodríguez-Martínez Xavier Soberón Rodolfo Dirzo James J Elser

The Cuatro Cienegas basin in the Chihuahuan desert is a system of springs, streams, and pools. These ecosystems support >70 endemic species and abundant living stromatolites and other microbial communities, representing a desert oasis of high biodiversity. Here, we combine data from molecular microbiology and geology to document the microbial biodiversity of this unique environment. Ten water s...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2017
Kerstin Berer Lisa Ann Gerdes Egle Cekanaviciute Xiaoming Jia Liang Xiao Zhongkui Xia Chuan Liu Luisa Klotz Uta Stauffer Sergio E Baranzini Tania Kümpfel Reinhard Hohlfeld Gurumoorthy Krishnamoorthy Hartmut Wekerle

There is emerging evidence that the commensal microbiota has a role in the pathogenesis of multiple sclerosis (MS), a putative autoimmune disease of the CNS. Here, we compared the gut microbial composition of 34 monozygotic twin pairs discordant for MS. While there were no major differences in the overall microbial profiles, we found a significant increase in some taxa such as Akkermansia in un...

2013
A J Park J Collins P A Blennerhassett J E Ghia E F Verdu P Bercik S M Collins

BACKGROUND Depression often coexists with the irritable bowel syndrome (IBS) which is characterized by alterations in gut function. There is emerging evidence that the microbial composition (microbiota) of the gut is altered in IBS, but the basis for this is poorly understood. The aim of this study was to determine whether the induction of chronic depression results in changes in the colonic fu...

Journal: :The Journal of clinical investigation 2014
Yael Haberman Timothy L Tickle Phillip J Dexheimer Mi-Ok Kim Dora Tang Rebekah Karns Robert N Baldassano Joshua D Noe Joel Rosh James Markowitz Melvin B Heyman Anne M Griffiths Wallace V Crandall David R Mack Susan S Baker Curtis Huttenhower David J Keljo Jeffrey S Hyams Subra Kugathasan Thomas D Walters Bruce Aronow Ramnik J Xavier Dirk Gevers Lee A Denson

Interactions between the host and gut microbial community likely contribute to Crohn disease (CD) pathogenesis; however, direct evidence for these interactions at the onset of disease is lacking. Here, we characterized the global pattern of ileal gene expression and the ileal microbial community in 359 treatment-naive pediatric patients with CD, patients with ulcerative colitis (UC), and contro...

2012
Robert W. Reid Melanie D. Spencer Timothy J. Hamp Anthony A. Fodor

ARISA (Automated Ribosomal Intergenic Spacer Analysis) is a low-cost technique that allows for the rapid comparison of different microbial environments. In this study, we asked if a set of ARISA profiles can distinguish human microbial environments from one another with the same accuracy as results generated from 454 high throughput DNA sequencing. Using a set of human microbial communities whe...

Journal: :jundishapur journal of microbiology 0
fatemeh shahkarami department of physiopathology, faculty of veterinary medicine, university of zabol, zabol, ir iran ahmad rashki department of physiopathology, faculty of veterinary medicine, university of zabol, zabol, ir iran; department of physiopathology, faculty of veterinary medicine, university of zabol, zabol, ir iran. tel: 98-9151970877, fax: 98-5422240735 zahra rashki ghalehnoo departments of microbiology and parasitology, faculty of medicine, zabol university of medical sciences, zabol, ir iran

conclusions resistance to oxacillin and other antibiotics was high, and most of the isolates were found to be multi-drug resistance (mdr). plasmid analysis of representative s. aureus isolates also demonstrates the presence of a wide range of plasmid sizes, with no consistent relationship between plasmid profiles and resistance phenotypes. regular surveillance of hospital infections and monitor...

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