We describe a probabilistic peptide fragmentation model for use in protein databank searching and de novo sequencing of electrospray tandem mass spectrometry data. A probabilistic framework for tuning of the model using a range of well-characterized samples are introduced. We present preliminary results of our tuning efforts.

The study demonstrates a new method to quantify Secondary Ion Mass Spectrometry (SIMS) images by using synergetic combination of Energy Dispersive X-ray spectroscopy (EDX) and SIMS.

Heavy-atom incorporation is an essential and often rate-limiting step in the determination of phases for X-ray diffraction studies of protein structures. Until the present, there has been no practical method (short of the X-ray diffraction experiment itself) to judge the success and extent of incorporation. Here we show that mass spectrometry is an effective tool for determining the extent of h...

The production of nuclear fuel used in the research reactor at Instituto de Pesquisas Energéticas e Nucleares (IPEN/CNEN-SP) requires a series of chemical and metallurgical processes. The quality of the end product depends on the control over all the stages of the manufacturing process and over the quality of raw materials employed. In fact, spectrometric methods are increasingly used as quanti...

Coal-bearing strata that host rare metal deposits are currently a hot issue in the field of coal geology. The purpose of this paper is to illustrate the mineralogy, geochemistry, and potential economic significance of rare metals in the late Permian tuff in Zhongliangshan mine, Chongqing, southwestern China. The methods applied in this study are X-ray fluorescence spectrometry (XRF), inductivel...

Decomposition of five amino acids, alanine, serine, cysteine, aspartic acid, and asparagine, under irradiation with soft X rays (magnesium Kalpha X-ray source) in ultra-high vacuum was studied by means of X-ray photoelectron spectrometry (XPS) and mass spectrometry. A comparative analysis of changes in XPS line shapes, stoichiometry and residual gas composition indicates that the molecules deco...

Gadolinium oxysulfide phosphor doped with trivalent terbium have been synthesized using urea homogenous precipitation and followed by sulfurization at 800 °C under argon atmosphere. Structural and morphological of synthesized phosphor powder were characterized by x-ray diffraction (XRD), scanning electron microscopy (SEM) and Fourier transform infrared spectrometry (FT-IR). Hexagonal structure ...

Imaging mass spectrometry combines the power of mass spectrometry to identify complex molecules based on mass with sample imaging. Recent advances in secondary ion mass spectrometry have improved sensitivity and spatial resolution, so that these methods have the potential to bridge between high-resolution structures obtained by X-ray crystallography and cyro-electron microscopy and ultrastructu...

A wide range of minerals occurs in feedstuffs as naturally occurring and purposely added elements, as well as by adventitious contamination. These mineral elements can generally be classified as nutritionally essential major elements, nutritionally essential minor and trace elements, and those regarded as toxic or with an essential/toxic duality. A survey is presented of methods used for the de...

abstract   background : the application of du emanation for first time contaminated certain areas in the south west region of iraq after the second gulf war (1991). these contaminated areas were discovered in 1994. radioactive contamination was detected using the nuclear enterprise pcm5/1 in soil samples collected from two regions near by grazing lands. this study was done for assessment of du ...