In the human placenta, DNA hypomethylation permits the expression of retrotransposon-derived genes that are normally silenced by methylation in somatic tissues. We previously identified hypomethylation of a retrotransposon-derived transcript of the voltage-gated potassium channel gene KCNH5 that is expressed only in human placenta. However, an RNA sequence from this placental-specific transcrip...

the sucrose non-fermenting 1-related protein kinase 2 (snrk2) family members are plant unique serine/threonine kinases which play a key role in cellular signaling in response to abiotic stresses. the three snrk2 members including srk2d, srk2i and srk2e are known to phosphorylate major abscisic acid (aba) responsive transcription factors, abf2 and abf4, involved in an aba-dependent stress signal...

Lexical rules have been used to cover a very diverse range of phenomena in constraint-based grammars. Examination of the full range of rules proposed shows that Carpenter’s (1991) postulated upper bound on the length of list-valued attributes such as subcat in the lexicon cannot be maintained, leading to unrestricted generative capacity in constraint-based formalisms utilizing HPSG-style lexica...

RNA sequencing (RNA-seq) has emerged as the method of choice for measuring the expression of RNAs in a given cell population. In most RNA-seq technologies, sequencing the full length of RNA molecules requires fragmentation into smaller pieces. Unfortunately, the issue of nonuniform sequencing coverage across a genomic feature has been a concern in RNA-seq and is attributed to biases for certain...

The synthesis of protein A in Staphylococcus aureus is regulated by global regulatory loci such as sar and agr. Phenotypic data indicate that both sar and agr suppress protein A synthesis; like agr, sar also regulates protein A production at the transcriptional level. To determine the genetic requirement of sar in protein A suppression, we transformed shuttle plasmids containing various sar fra...

Abstract Tropical dry forests (TDFs) worldwide have an environment-sensitive phenological signal, which easily marks their response to the changing climatic conditions, especially precipitation and temperature. Using TDF characteristics as a proxy, this study aims evaluate current continental climate change across Americas. Here, we show that TDFs are resilient water stress droughts by increasi...

A combination of cDNA-amplified fragment length polymorphism (AFLP) and bulked segregant analysis (BSA) was used to identify genes co-segregating with earliness of tuberization in a diploid potato population. This approach identified 37 transcript-derived fragments with a polymorphic segregation pattern between early and late tuberizing bulks. Most of the identified transcripts mapped to chromo...