We present a simple method for utilizing experimental data to improve the efficiency of numerical calculations of free energy profiles from molecular dynamics simulations. The method involves umbrella sampling simulations with restraining potentials based on a known approximate estimate of the free energy profile derived solely from experimental data. The use of the experimental data results in...

The equilibrium folding of the catalytic domain of Bacillus subtilis RNase P RNA is investigated by single-molecule fluorescence resonance energy transfer (FRET). Previous ensemble studies of this 255-nucleotide ribozyme described the equilibrium folding with two transitions, U-to-I(eq)-to-N, and focused on the I(eq)-to-N transition. The present study focuses on the U-to-I(eq) transition. Compa...

The dynamic mechanisms by which RNAs acquire biologically functional structures are of increasing importance to the rapidly expanding fields of RNA therapeutics and biotechnology. Large energy barriers separating misfolded and functional states arising from alternate base pairing are a well-appreciated characteristic of RNA. In contrast, it is typically assumed that functionally folded RNA occu...

existence of energy reserves as god-given assets was considered as a unique opportunity for the former republics of soviet :union: , their dependence on the former center (russia) for transferring energy to the consuming markets has confronted them with various challenges. as one of these republics, turkmenistan enjoys excellent geo-economic status since a long time ago due to its huge natural ...

A brief outline of certain features of the chemiosmotic hypothesis of the mechanism of free-energy transfer between the reactions of electron transport and adenosine triphosphate synthesis catalysed by biological membranes is given. Pulses of electron transport induced by the addition of small quantities of oxygen to suspensions of the bacterium Paracoccus denitrifcans lead to vectorial H+ move...

Beams of sodium atoms with energies of a few eV are crossed with a beam of oriented CH3NO2 molecules to study the effect of collision energy and orientation on electron transfer. The electron transfer produces Na+ ions and free electrons, parent negative ions (CH)NO2-), and fragmentation ions NO2- and O- in proportions that depend on the collision energy. The steric asymmetry is very small or z...

Photoelectrochemical water splitting plays a key role in a promising path to the carbon-neutral generation of solar fuels. Wurzite GaN and its alloys (e.g., GaN/ZnO and InGaN) are demonstrated photocatalysts for water oxidation, and they can drive the overall water splitting reaction when coupled with co-catalysts for proton reduction. The present work investigates the water oxidation mechanism...