نتایج جستجو برای: iterative threading assembly refinement

تعداد نتایج: 225558  

2015
Steffen Lindert J. Andrew McCammon

Many excellent methods exist that incorporate cryo-electron microscopy (cryoEM) data to constrain computational protein structure prediction and refinement. Previously, it was shown that iteration of two such orthogonal sampling and scoring methods – Rosetta and molecular dynamics (MD) simulations – facilitated exploration of conformational space in principle. Here, we go beyond a proof-of-conc...

Journal: :Journal of Computational and Applied Mathematics 2006

Journal: :Proteins 2010
Shashi B Pandit Jeffrey Skolnick

In a variety of threading methods, often poorly ranked (low z-score) templates have good alignments. Here, a new method, TASSER_low-zsc that identifies these low z-score-ranked templates to improve protein structure prediction accuracy, is described. The approach consists of clustering of threading templates by affinity propagation on the basis of structural similarity (thread_cluster) followed...

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