Background The human microbiome project [1] is the first systematic and large-scale survey of microbial communities present in a eukaryotic metagenome. The availability of low-cost high-throughput next-generation sequencing technologies that enable us to sequence eukaryotes to a high depth of coverage presents an opportunity for in silico discovery of endosymbionts. We describe a method for min...

OBJECTIVE Interaction of CA19-9 with E-selectin is involved in initiation of hematogenous metastases. We investigated whether serum concentrations of E-selectin and CA19-9 are good predictors of hematogenous metastases and prognosis in colorectal cancer. METHODS Pre-operative serum samples were obtained from 152 patients with colorectal cancer, and from 28 healthy volunteers. Correlation betw...

In 1994, the uncultured phloem-restricted bacteria of citrus huanglongbing (ex-greening) disease in Asia and Africa were characterized as 'Candidatus Liberobacter asiaticum' and 'Candidatus Liberobacter africanum', respectively. Following the rules of the International Code of Nomenclature of Bacteria, the two bacterial species have now been renamed 'Candidatus Liberibacter asiaticus' and 'Cand...

Let \(2<n<\omega\). Then \({\sf CA}_n\) denotes the class of cylindric algebras dimension \(n\), RCA}_n\) representable \(\sf CA_n\)s, CRCA}_n\) completely CA}_n\)s, and Nr}_n{\sf CA}_{\omega}(\subseteq {\sf CA}_n\)) \(n\)-neat reducts CA}_{\omega}\)s. The elementary closure CRCA}_n\)s (\(\mathbf{K_n}\)) non-elementary At}({\sf CA}_{\omega})\) are characterized using two-player zero-sum g...

The bacterial diversity associated with citrus leaf midribs was characterized for citrus groves that contained the Huanglongbing (HLB) pathogen, which has yet to be cultivated in vitro. We employed a combination of high-density phylogenetic 16S rRNA gene microarrays and 16S rRNA gene clone library sequencing to determine the microbial community composition for symptomatic and asymptomatic citru...

All organisms require S-adenosylmethionine (SAM) as a methyl group donor and cofactor for various biologically important processes. However, certain obligate intracellular parasitic bacteria and also the amoeba symbiont Amoebophilus asiaticus have lost the capacity to synthesize this cofactor and hence rely on its uptake from host cells. Genome analyses revealed that A. asiaticus encodes a puta...

Studies on grasshopper diets have historically employed a range of methodologies, each with certain advantages and disadvantages. For example, some methodologies are qualitative instead of quantitative. Others require long experimental periods or examine population-level effects, only. In this study, we used real-time PCR to examine diets of individual grasshoppers. The method has the advantage...

The relationship between the causal agent of Huanglongbing (HLB), Ca. Liberibacter asiaticus(Las), and the naturally occurring endosymbiotic community of its insect vector, the Asian citrus psyllid (ACP), Diaphorina citri, was studied. Variation was observed in the titer of Las within an ACP population feeding on the same material. The cause of this disparity is unknown, and has implications fo...