While the majority of the ribosomal RNA structure is conserved in the three major domains of life--archaea, bacteria, and eukaryotes, specific regions of the rRNA structure are unique to at least one of these three primary forms of life. In particular, the comparative secondary structure for the eukaryotic SSU rRNA contains several regions that are different from the analogous regions in the ba...

A myxosporean species found to develop in the liver of 10 out of 24 common shrews, Sorex araneus L., caught in South Bohemia, Czech Republic, was identified as Soricimyxum fegati Prunescu, Prunescu, Pucek et Lom, 2007, the unique representative of the genus and the first myxosporean species known to develop from plasmodia to spores in a terrestrial mammal. The original description of this speci...

This paper presents a comparison of global temperature variations in the stratosphere and troposphere between satellite measurements (SSU + MSU), reanalysis data sets, and CMIP5 models. The focus is on comparing interannual variability and trends among the data sets, and direct comparisons are made by constructing weighted averages of the reanalysis and model temperatures to approximately match...

In 1992, two independent reports based on small-subunit rRNA gene (SSU rDNA) cloning revealed the presence of novel Archaea among marine bacterioplankton. Here, we report the presence of further novel Archaea SSU rDNA sequences recovered from the midgut contents of a deep-sea marine holothurian. Phylogenetic analyses show that these abyssal Archaea are a paraphyletic component of a highly diver...

The proliferative kidney organism unknown (PKX), a serious salmonid fish pathogen, is considered to be a myxosporean on the basis of ultrastructural studies, but its real taxonomic position has never been confirmed. In order to ascertain its position, genomic DNA was extracted from PKX and small subunit (SSU) ribosomal DNA was amplified by PCR, cloned and sequenced. A phylogenetical analysis on...

We introduce a model based on stochastic context-free grammars (SCFGs) that can construct small subunit ribosomal RNA (SSU rRNA) multiple alignments. The method takes into account both primary sequence and secondary structure basepairing interactions. We show that this method produces multiple alignments of quality close to hand edited ones and outperforms several other methods. We also introdu...

Monochids are predatory nematodes that can be found in various ecosystems. In this study, we analyzed monochids from the rhizosphere of Arabica coffee Bondowoso Regency-Indonesia. The morphological analysis showed nematode belonged to Mylonchulus hawaiiensis (Cassidy, 1931) species. results were also confirmed by a molecular using DNA single nematode. study involved polymerase chain reaction pr...