Family Phyllanthaceae belongs to the eudicot order Malpighiales, and its species are herbs, shrubs, trees that mostly distributed in tropical regions. Here, we elucidate molecular evolution of chloroplast genome identify polymorphic loci for phylogenetic inference. We de novo assembled genomes three species, i.e., Phyllanthus emblica, Flueggea virosa, Leptopus cordifolius, compared them with si...