نتایج جستجو برای: ests

تعداد نتایج: 2273  

Journal: :Plant & cell physiology 1999
A J Wood R J Duff M J Oliver

The desiccation-tolerant moss Tortula ruralis [Hedw.] Gaerten., Meyer & Scherb. has both a constitutive protection system and an active rehydration induced recovery mechanism apparently unique to bryophytes. Immediately following rehydration, desiccated T.ruralis gametophytes produce a set of polypeptides whose synthesis is unique to the rehydrated state. We report the construction of a cDNA ex...

Journal: :Human molecular genetics 1999
A B Skvorak Z Weng A J Yee N G Robertson C C Morton

To identify candidate genes for human hearing disorders and to understand better human hearing at the molecular level, we constructed a human cochlear cDNA library. An aliquot of the unsubtracted cochlear library was contributed to the IMAGE Consortium at Lawrence Livermore National Laboratory for the generation of expressed sequence tags (ESTs) by the Merck/WashU EST project. Over 4000 ESTs we...

Journal: :Genome research 2004
Todd E Scheetz Jennifer J Laffin Brian Berger Sara Holte Susan A Baumes Robert Brown Shereen Chang Justin Coco Jim Conklin Keith Crouch Micca Donohue Greg Doonan Chris Estes Mari Eyestone Katrina Fishler Jack Gardiner Lankai Guo Brad Johnson Catherine Keppel Rikki Kreger Mark Lebeck Rudy Marcelino Vladan Miljkovich Mindee Perdue Ling Qui Joshua Rehmann Rebecca S Reiter Bridgette Rhoads Kelly Schaefer Christina Smith Ivana Sunjevaric Kurtis Trout Ning Wu Clayton L Birkett Jared Bischof Barry Gackle Allen Gavin A Jason Grundstad Brian Mokrzycki Chris Moressi Brian O'Leary Kevin Pedretti Chad Roberts Natalie L Robinson Michael Smith Dylan Tack Nishank Trivedi Tamara Kucaba Tom Freeman Jim J-C Lin Maria F Bonaldo Thomas L Casavant Val C Sheffield M Bento Soares

The rat is an important animal model for human diseases and is widely used in physiology. In this article we present a new strategy for gene discovery based on the production of ESTs from serially subtracted and normalized cDNA libraries, and we describe its application for the development of a comprehensive nonredundant collection of rat ESTs. Our new strategy appears to yield substantially mo...

Journal: :Genetics 2004
J D Munkvold R A Greene C E Bermudez-Kandianis C M La Rota H Edwards S F Sorrells T Dake D Benscher R Kantety A M Linkiewicz J Dubcovsky E D Akhunov J Dvorák Miftahudin J P Gustafson M S Pathan H T Nguyen D E Matthews S Chao G R Lazo D D Hummel O D Anderson J A Anderson J L Gonzalez-Hernandez J H Peng N Lapitan L L Qi B Echalier B S Gill K G Hossain V Kalavacharla S F Kianian D Sandhu M Erayman K S Gill P E McGuire C O Qualset M E Sorrells

The focus of this study was to analyze the content, distribution, and comparative genome relationships of 996 chromosome bin-mapped expressed sequence tags (ESTs) accounting for 2266 restriction fragments (loci) on the homoeologous group 3 chromosomes of hexaploid wheat (Triticum aestivum L.). Of these loci, 634, 884, and 748 were mapped on chromosomes 3A, 3B, and 3D, respectively. The individu...

Journal: :Genome research 2004
Atsushi Ogura Kazuho Ikeo Takashi Gojobori

Although the camera eye of the octopus is very similar to that of humans, phylogenetic and embryological analyses have suggested that their camera eyes have been acquired independently. It has been known as a typical example of convergent evolution. To study the molecular basis of convergent evolution of camera eyes, we conducted a comparative analysis of gene expression in octopus and human ca...

2004
A. DAVISON M. L. BLAXTER

The pond snail Lymnaea stagnalis is an intermediate vector for the liver fluke Fasciola hepatica, a common parasite of ruminants and humans. Yet, despite being a disease of medical and economic importance, as well as a potentially useful comparative tool, the genetics of the relationship between Lymnaea and Fasciola has barely been investigated. As a complement to forthcomingF. hepatica express...

Journal: :Human molecular genetics 1997
A Pallavicini R Zimbello N Tiso T Muraro L Rampoldi S Bortoluzzi G Valle G Lanfranchi G A Danieli

By sequencing 11,405 individual expressed sequence tags (ESTs) from a cDNA library of a human skeletal muscle, we identified 1945 individual transcripts, 725 of which showed no correspondence with known human genes. We report here the chromosomal localization of 267 of these, obtained by radiation hybrid (RH) mapping. The map position of additional 242 ESTs from the same library, corresponding ...

2007
Monica Jain Jeff Shrager Elizabeth H. Harris Renee Halbrook Arthur R. Grossman Charles Hauser Olivier Vallon

Clustering and assembly of expressed sequence tags (ESTs) constitute the basis for most genomewide descriptions of a transcriptome. This approach is limited by the decline in sequence quality toward the end of each EST, impacting both sequence clustering and assembly. Here, we exploit the available draft genome sequence of the unicellular green alga Chlamydomonas reinhardtii to guide clustering...

2009
Hanhong Bae Richard C. Sicher Moon S. Kim Soo-Hyung Kim Mary D. Strem Rachel L. Melnick Bryan A. Bailey

Theobroma cacao (cacao) is cultivated in tropical climates and is exposed to drought stress. The impact of the endophytic fungus Trichoderma hamatum isolate DIS 219b on cacao's response to drought was studied. Colonization by DIS 219b delayed drought-induced changes in stomatal conductance, net photosynthesis, and green fluorescence emissions. The altered expression of 19 expressed sequence tag...

2012
Keng-Hoong Ng Chin-Kuan Ho Somnuk Phon-Amnuaisuk

BACKGROUND Clustering is a key step in the processing of Expressed Sequence Tags (ESTs). The primary goal of clustering is to put ESTs from the same transcript of a single gene into a unique cluster. Recent EST clustering algorithms mostly adopt the alignment-free distance measures, where they tend to yield acceptable clustering accuracies with reasonable computational time. Despite the fact th...

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