In EST projects it is extremely important to be able to identify the informative region of the read, by trimming the non informative ones. Several methods for sequence trimming are available. In this work we present a methodology to compare such methods, based on the sequencing of defined sequences (pUC18 cloning vector) and homology searches to find the informative region using BLAST. This met...

Unlike the visual trimming of B-spline surfaces, which hides unwanted portions in rendering, the geometric trimming approach provides a mathematically clean representation without redundancy. However, the process may lead to significant deviation from the corresponding portion on the original surface. Optimization is required to minimize approximation errors and obtain higher accuracy. In this ...

An experimental study has been conducted on the hydrodynamics of a stage mixer-settler to obtain an appropriate design. In this paper several tests was performed to investigate full factorial design of experiments. Since each test was repeated seven times, the repeatability of the test was confirmed (P=1 bar and T=25 °C). Sauter diameter was determined by photographing both the mix...

in this paper, the reasons of damage water pumps parts of the air compressor cooling system were studied. to reach this goal, the works like preparing metallographic samples, evaluation of structure, investigation of mechanical properties, the alloy parts detection and chemical analysis of deposit and corrosion products collected from the parts were performed. according to studies and results o...

Although the trimming of α1,2-mannose residues from precursor N-linked oligosaccharides is an essential step in the delivery of misfolded glycoproteins to endoplasmic reticulum (ER)-associated degradation (ERAD), the exact role of this trimming is unclear. EDEM1 was initially suggested to bind N-glycans after mannose trimming, a role presently ascribed to the lectins OS9 and XTP3-B, because of ...

The widespread and rapid adoption of high-throughput sequencing technologies has afforded researchers the opportunity to gain a deep understanding of genome level processes that underlie evolutionary change, and perhaps more importantly, the links between genotype and phenotype. In particular, researchers interested in functional biology and adaptation have used these technologies to sequence m...

A key step in the transformation of raw sequencing reads into biological insights is the trimming of adapter sequences and low-quality bases. Read trimming has been shown to increase the quality and reliability while decreasing the computational requirements of downstream analyses. Many read trimming software tools are available; however, no tool simultaneously provides the accuracy, computatio...