The Mediator is a highly conserved, large multiprotein complex that is involved essentially in the regulation of eukaryotic mRNA transcription. It acts as a general transcription factor by integrating regulatory signals from gene-specific activators or repressors to the RNA Polymerase II. The internal network of interactions between Mediator subunits that conveys these signals is largely unknow...

The area of data integration has gained increased popularity in recent years. This paper describes a data browser for a data integration system where an intermediate layer of a distributed multidatabase system, a mediator database system, is used to query and integrate data from heterogeneous data sources. The data sources can be regular relational databases but also other data producing progra...

We present the information mediator prototype called Kind [GLM00], recently developed as part of an integrated Neuroscience workbench project at SDSC/UCSD within the NPACI project. The broad goal of the workbench is to serve as an environment where, among other tasks, the Neuroscientist can query a mediator to retrieve information from across a number of information sources, and use the results...

Mediator is a multiprotein co-activator of RNA polymerase (Pol) II transcription. Mediator contains a conserved core that comprises the 'head' and 'middle' modules. We present here a structure-function analysis of the essential Med11/22 heterodimer, a part of the head module. Med11/22 forms a conserved four-helix bundle domain with C-terminal extensions, which bind the central head subunit Med1...

The multiprotein Mediator complex has been shown to interact with gene-specific regulatory proteins and RNA polymerase II in vitro. Here, we use chromatin immunoprecipitation to analyze the recruitment of Mediator to GAL genes of yeast in vivo. We find that Mediator associates exclusively with transcriptionally active and not inactive GAL genes. This association maps to the upstream activating ...

Query rewriting method is proposed for the heterogeneous information integration infrastructure formed by the subject mediator environment. Local as View (LAV) approach treating schemas exported by sources as materialized views over virtual classes of the mediator is considered as the basis for the subject mediation infrastructure. In spite of significant progress of query rewriting with views,...

In a simple mediation model, the effect of a manipulated variable X on a dependent variable Y over and above the effect of the mediator Me can be estimated by regressing Y on X and Me. The impact of X on Y in such a model is adjusted for the relationship both between X and Me and between Me and Y . The authors examine the adjustment function in the context of a 2× 2 design with two manipulated ...

It is often of interest to decompose the total effect of an exposure into a component that acts on the outcome through some mediator and a component that acts independently through other pathways. Said another way, we are interested in the direct and indirect effects of the exposure on the outcome. Even if the exposure is randomly assigned, it is often infeasible to randomize the mediator, leav...

In Saccharomyces cerevisiae Mediator, a subgroup of proteins (Srb8, Srb9, Srb10, and Srb11) form a module, which is involved in negative regulation of transcription. Homologues of Srb10 and Srb11 are found in some mammalian Mediator preparations, whereas no clear homologues have been reported for Srb8 and Srb9. Here, we identify a TRAP240/ARC250 homologue in Schizosaccharomyces pombe and demons...

Mediator is a prominent multisubunit coactivator that functions as a bridge between gene-specific activators and the basal RNA polymerase (Pol) II initiation machinery. Here, we study the poorly documented role of Mediator in basal, or activator-independent, transcription in vivo. We show that Mediator is still present at the promoter when the Pol II machinery is recruited in the absence of an ...