نتایج جستجو برای: primer design

تعداد نتایج: 989299  

2018
Allan RD Nunes Brenda Elen B Alves Hannaly WB Pereira Yasmin M Nascimento Ingryd C Morais José Veríssimo Fernandes Josélio MG Araújo Daniel CF Lanza

BACKGROUND The genus Flavivirus includes a variety of medically important viruses, including dengue virus (DENV) and Zika virus (ZIKV), which are most prevalent in Brazil. Because the clinical profile of patients affected by different DENV serotypes or ZIKV may be similar, the development of new methods that facilitate a rapid and accurate diagnosis is crucial. OBJECTIVES The current study aime...

Journal: :BioTechniques 1998
M Ronaghi B Pettersson M Uhlén P Nyrén

The need for a primer hybridization step before sequencing has been eliminated using a stem-loop structure generated by PCR. The loop structure is obtained by careful design of the PCR primer or by cloning the target DNA into a dedicated vector (pRIT 28HP). After solid-phase capture of the PCR product, the loop is formed by elution of the non-bound strand. Here, we show that both the immobilize...

2016
Richard Souvenir

AN ITERATIVE BEAM SEARCH ALGORITHM FOR DEGENERATE PRIMER SELECTION by Richard M. Souvenir ADVISOR: Professor W. Zhang December, 2003 Saint Louis, Missouri Single Nucleotide Polymorphism (SNP) Genotyping is an important molecular genetics process in the early stages of producing results that will be useful in the medical field. Due to inherent complexities in DNA manipulation and analysis, many ...

Journal: :Genome informatics. Workshop on Genome Informatics 1999
Doi Imai

The selection of a suitable set of primers is very important for polymerase chain reaction (PCR) experiments. Most existing algorithms for primer selection are concerned with producing a primer pair for each DNA sequence. However, when all the DNA sequences of the target objects are already known, like the approximately 6,000 yeast ORFs, we may want to design a small set of primers to PCR ampli...

2018
Kun Lu Tian Li Jian He Wei Chang Rui Zhang Miao Liu Mengna Yu Yonghai Fan Jinqi Ma Wei Sun Cunmin Qu Liezhao Liu Nannan Li Ying Liang Rui Wang Wei Qian Zhanglin Tang Xinfu Xu Bo Lei Kai Zhang Jiana Li

Real-time quantitative polymerase chain reaction (qPCR) is one of the most important methods for analyzing the expression patterns of target genes. However, successful qPCR experiments rely heavily on the use of high-quality primers. Various qPCR primer databases have been developed to address this issue, but these databases target only a few important organisms. Here, we developed the qPrimerD...

Journal: :Bioinformatics 2009
Wubin Qu Zhiyong Shen Dongsheng Zhao Yi Yang Chenggang Zhang

SUMMARY We developed a program named MFEprimer for evaluating the specificity of PCR primers based on multiple factors, including sequence similarity, stability at the 3'-end of the primer, melting temperature, GC content and number of binding sites between the primer and DNA templates. MFEprimer can help the user to select more suitable primers before running either standard or multiplex PCR r...

Journal: :Bioinformatics 2002
Long-Cheng Li Rajvir Dahiya

MOTIVATION DNA methylation is an epigenetic mechanism of gene regulation. Bisulfite- conversion-based PCR methods, such as bisulfite sequencing PCR (BSP) and methylation specific PCR (MSP), remain the most commonly used techniques for methylation mapping. Existing primer design programs developed for standard PCR cannot handle primer design for bisulfite-conversion-based PCRs due to changes in ...

Journal: :Genomics 2011
Ruslan Kalendar David Lee Alan H Schulman

The polymerase chain reaction is fundamental to molecular biology and is the most important practical molecular technique for the research laboratory. We have developed and tested efficient tools for PCR primer and probe design, which also predict oligonucleotide properties based on experimental studies of PCR efficiency. The tools provide comprehensive facilities for designing primers for most...

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