نتایج جستجو برای: protein interaction ppis

تعداد نتایج: 1703658  

2012
Martin H. Schaefer Jean-Fred Fontaine Arunachalam Vinayagam Pablo Porras Erich E. Wanker Miguel A. Andrade-Navarro

Protein function is often modulated by protein-protein interactions (PPIs) and therefore defining the partners of a protein helps to understand its activity. PPIs can be detected through different experimental approaches and are collected in several expert curated databases. These databases are used by researchers interested in examining detailed information on particular proteins. In many anal...

2016
Maxim Shatsky Ming Dong Haichuan Liu Lee Lisheng Yang Megan Choi Mary E. Singer Jil T. Geller Susan J. Fisher Steven C. Hall Terry C. Hazen Steven E. Brenner Gareth Butland Jian Jin H. Ewa Witkowska John-Marc Chandonia Mark D. Biggin

Identifying protein-protein interactions (PPIs) at an acceptable false discovery rate (FDR) is challenging. Previously we identified several hundred PPIs from affinity purification - mass spectrometry (AP-MS) data for the bacteria Escherichia coli and Desulfovibrio vulgaris These two interactomes have lower FDRs than any of the nine interactomes proposed previously for bacteria and are more enr...

2016
Núria Bayó‐Puxan Ricard Rodríguez‐Mias Michael Goldflam Martin Kotev Sonia Ciudad Christopher J. Hipolito Monica Varese Hiroaki Suga Ramón Campos‐Olivas Xavier Barril Víctor Guallar Meritxell Teixidó Jesús García Ernest Giralt

The modulation of protein-protein interactions (PPIs) is emerging as a highly promising tool to fight diseases. However, whereas an increasing number of compounds are able to disrupt peptide-mediated PPIs efficiently, the inhibition of domain-domain PPIs appears to be much more challenging. Herein, we report our results related to the interaction between vascular endothelial growth factor (VEGF...

2014
Doortje Borrenberghs Wannes Thys Susana Rocha Jonas Demeulemeester Caroline Weydert Peter Dedecker Johan Hofkens Zeger Debyser Jelle Hendrix

Employing viruses as nanoscopic lipid-enveloped test tubes allows the miniaturization of protein-protein interaction (PPI) assays while preserving the physiological environment necessary for particular biological processes. Applied to the study of the human immunodeficiency virus type 1 (HIV-1), viral biology and pathology can also be investigated in novel ways, both in vitro as well as in infe...

Journal: :Drug metabolism and disposition: the biological fate of chemicals 2016
Kenji Ikemura Yugo Hamada Chinatsu Kaya Tomoyuki Enokiya Yuichi Muraki Hiroki Nakahara Hajime Fujimoto Tetsu Kobayashi Takuya Iwamoto Masahiro Okuda

Pemetrexed, a multitargeted antifolate, is eliminated by tubular secretion via human organic anion transporter 3 (hOAT3). Although proton pump inhibitors (PPIs) are frequently used in cancer patients, the drug interaction between PPIs and pemetrexed remains to be clarified. In this study, we examined the drug interaction between pemetrexed and PPIs in hOAT3-expressing cultured cells, and retros...

Journal: :Journal of medicinal chemistry 2013
Loes M Stevers Eline Sijbesma Maurizio Botta Carol MacKintosh Tomas Obsil Isabelle Landrieu Ylenia Cau Andrew J Wilson Anna Karawajczyk Jan Eickhoff Jeremy Davis Michael Hann Gavin O'Mahony Richard G Doveston Luc Brunsveld Christian Ottmann

Direct interactions between proteins are essential for the regulation of their functions in biological pathways. Targeting the complex network of protein-protein interactions (PPIs) has now been widely recognized as an attractive means to therapeutically intervene in disease states. Even though this is a challenging endeavor and PPIs have long been regarded as "undruggable" targets, the last tw...

2014
Priyanka Giri Anil Kumar Gohar Taj

Protein-Protein interactions (PPIs) are vital to most biological processes thus the identification of PPIs is of primary importance. Here, we endeavor to identify the downstream interacting partners of (AtMAPK3P) in Arabidopsis thaliana using the docking approach. Out of 131 members of MYB transcription factors 41 members are showing interactions with AtMAPK3P while the rest are showing non-int...

2012
Konstantinos A. Theofilatos Christos M. Dimitrakopoulos Dimitris Kleftogiannis Charalampos N. Moschopoulos Stergios Papadimitriou Spiridon D. Likothanassis Seferina Mavroudi

Proteins and their interactions are considered to play a significant role in many cellular processes. The identification of Protein-Protein interactions (PPIs) in human is an open research area. Many Databases, which contain information about experimentally and computationally detected human PPIs as well as their corresponding annotation data, have been developed. However, these databases conta...

Journal: :Drug discovery today 2014
Fabrizio Giordanetto Anja Schäfer Christian Ottmann

Protein-protein interactions (PPIs) are implicated in every disease and mastering the ability to influence PPIs with small molecules would considerably enlarge the druggable genome. Whereas inhibition of PPIs has repeatedly been shown to work successfully, targeted stabilization of PPIs is underrepresented in the literature. This is all the more surprising because natural products like FK506, r...

Journal: :Molecular & cellular proteomics : MCP 2016
Maxim Shatsky Simon Allen Barbara L Gold Nancy L Liu Thomas R Juba Sonia A Reveco Dwayne A Elias Ramadevi Prathapam Jennifer He Wenhong Yang Evelin D Szakal Haichuan Liu Mary E Singer Jil T Geller Bonita R Lam Avneesh Saini Valentine V Trotter Steven C Hall Susan J Fisher Steven E Brenner Swapnil R Chhabra Terry C Hazen Judy D Wall H Ewa Witkowska Mark D Biggin John-Marc Chandonia Gareth Butland

Numerous affinity purification-mass spectrometry (AP-MS) and yeast two-hybrid screens have each defined thousands of pairwise protein-protein interactions (PPIs), most of which are between functionally unrelated proteins. The accuracy of these networks, however, is under debate. Here, we present an AP-MS survey of the bacterium Desulfovibrio vulgaris together with a critical reanalysis of nine ...

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