نتایج جستجو برای: throughput nucleotide sequencing

تعداد نتایج: 307622  

Journal: :Molecular ecology resources 2017
Alison G Nazareno Jordan B Bemmels Christopher W Dick Lúcia G Lohmann

High-throughput DNA sequencing facilitates the analysis of large portions of the genome in nonmodel organisms, ensuring high accuracy of population genetic parameters. However, empirical studies evaluating the appropriate sample size for these kinds of studies are still scarce. In this study, we use double-digest restriction-associated DNA sequencing (ddRADseq) to recover thousands of single nu...

2012
Tomas Babak

Enabled by high-throughput technologies that are capable of generating millions of sequencing reads, transcriptome sequencing is emerging as an important approach for mapping allelic imbalance (AI), where transcription is biased toward one allele in a diploid system. AI is identi fi ed by counting sequencing reads that map to genomic regions containing heterozygous SNPs, where the base identity...

2013
Claudia Gonzaga-Jauregui

6 Current genome-wide technologies allow interrogation and exploration of the human genome 7 as never before. Next-generation sequencing (NGS) technologies, along with high resolution 8 Single Nucleotide Polymorphisms (SNP) arrays and array Comparative Genomic Hybrization 9 (aCGH) enable assessment of human genome variation at the finest resolution from base pair 10 changes such as simple nucle...

2011
Ilaria Milano Massimiliano Babbucci Frank Panitz Rob Ogden Rasmus O. Nielsen Martin I. Taylor Sarah J. Helyar Gary R. Carvalho Montserrat Espiñeira Miroslava Atanassova Fausto Tinti Gregory E. Maes Tomaso Patarnello Luca Bargelloni

The growing accessibility to genomic resources using next-generation sequencing (NGS) technologies has revolutionized the application of molecular genetic tools to ecology and evolutionary studies in non-model organisms. Here we present the case study of the European hake (Merluccius merluccius), one of the most important demersal resources of European fisheries. Two sequencing platforms, the R...

2016
Tian Liu Linlin Guo Yuling Pan Qi Zhao Jianhua Wang Zhenqiao Song

Salvia miltiorrhiza is an important medicinal crop in traditional Chinese medicine (TCM). Knowledge of its genetic foundation is limited because sufficient molecular markers have not been developed, and therefore a high-density genetic linkage map is incomplete. Specific length amplified fragment sequencing (SLAF-seq) is a recently developed high-throughput strategy for large-scale SNP (Single ...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2016
P Benjamin Stranges Mirkó Palla Sergey Kalachikov Jeff Nivala Michael Dorwart Andrew Trans Shiv Kumar Mintu Porel Minchen Chien Chuanjuan Tao Irina Morozova Zengmin Li Shundi Shi Aman Aberra Cleoma Arnold Alexander Yang Anne Aguirre Eric T Harada Daniel Korenblum James Pollard Ashwini Bhat Dmitriy Gremyachinskiy Arek Bibillo Roger Chen Randy Davis James J Russo Carl W Fuller Stefan Roever Jingyue Ju George M Church

Scalable, high-throughput DNA sequencing is a prerequisite for precision medicine and biomedical research. Recently, we presented a nanopore-based sequencing-by-synthesis (Nanopore-SBS) approach, which used a set of nucleotides with polymer tags that allow discrimination of the nucleotides in a biological nanopore. Here, we designed and covalently coupled a DNA polymerase to an α-hemolysin (αHL...

Journal: :Genome research 2009
Gemma C Langridge Minh-Duy Phan Daniel J Turner Timothy T Perkins Leopold Parts Jana Haase Ian Charles Duncan J Maskell Sarah E Peters Gordon Dougan John Wain Julian Parkhill A Keith Turner

Very high-throughput sequencing technologies need to be matched by high-throughput functional studies if we are to make full use of the current explosion in genome sequences. We have generated a very large bacterial mutant pool, consisting of an estimated 1.1 million transposon mutants and we have used genomic DNA from this mutant pool, and Illumina nucleotide sequencing to prime from the trans...

2014
Rachit K. Saxena David Edwards Rajeev K. Varshney

Differences between plant genomes range from single nucleotide polymorphisms to large-scale duplications, deletions and rearrangements. The large polymorphisms are termed structural variants (SVs). SVs have received significant attention in human genetics and were found to be responsible for various chronic diseases. However, little effort has been directed towards understanding the role of SVs...

2012
Benjamin J. Raphael

Differences between individual human genomes, or between human and cancer genomes, range in scale from single nucleotide variants (SNVs) through intermediate and large-scale duplications, deletions, and rearrangements of genomic segments. The latter class, called structural variants (SVs), have received considerable attention in the past several years as they are a previously under appreciated ...

نمودار تعداد نتایج جستجو در هر سال

با کلیک روی نمودار نتایج را به سال انتشار فیلتر کنید