نتایج جستجو برای: tmrna

تعداد نتایج: 347  

2009
Justin O’Grady Katrina Lacey Barry Glynn Terry J. Smith Thomas Barry Majella Maher

tmRNA^anovel high-copy-numberRNAdiagnostic target ^ its application forStaphylococcus aureus detection using real-timeNASBA Justin O’Grady, Katrina Lacey, Barry Glynn, Terry J. Smith, Thomas Barry & Majella Maher The Biomedical Diagnostics Institute Program, National University of Ireland Galway, Galway, Ireland; Molecular Diagnostics Research Group, National Centre for Biomedical Engineering S...

2018
Lee E Hughes Christopher D Shaffer Vassie C Ware Issac Aguayo Rahat M Aziz Swapan Bhuiyan Isaac S Bindert Canyon K Calovich-Benne Jordyn Chapman Richard Donegan-Quick Amal Farooq Cynthia Garcia Lee H Graham Baylee Y Green Margaret A Kenna Emily R Kneeream Christian E Laing Catherine M Mageeney Sandra N Meridew Abigail R Mikolon Ryann E Morgan Subhayu Nayek Idowu D Olugbade Kim C Pike Lauren E Schlegel Taylor C Shishido Tara Suresh Nikita Suri Kathleen Weston Hafer Rebecca A Garlena Daniel A Russell Steven G Cresawn Welkin H Pope Deborah Jacobs-Sera Graham F Hatfull

Cluster BE1 Streptomyces bacteriophages belong to the Siphoviridae, with genome sizes over 130 kbp, and they contain direct terminal repeats of approximately 11 kbp. Eight newly isolated closely related cluster BE1 phages contain 43 to 48 tRNAs, one transfer-messenger RNA (tmRNA), and 216 to 236 predicted open reading frames (ORFs), but few of their genes are shared with other phages, including...

Journal: :Nucleic Acids Research 2006
Sylvie Nonin-Lecomte Brice Felden Frédéric Dardel

The transfer-messenger RNA (tmRNA) pseudoknot PK1 is essential for bacterial trans-translation, a ribosomal rescue mechanism. We report the solution structure of PK1 from Aquifex aeolicus, which despite an unprecedented small number of nucleotides and thus an unprecented compact size, displays a very high thermal stability. Several unusual structural features account for these properties and in...

Journal: :Journal of Biology 2008
Jacek Wower Iwona K Wower Christian Zwieb

The transfer-messenger ribonucleoprotein (tmRNP), which is composed of RNA and a small protein, small protein B (SmpB), recycles ribosomes that are stalled on broken mRNAs lacking stop codons and tags the partially translated proteins for degradation. Although it is not yet understood how the ribosome gets from the 3' end of the truncated message onto the messenger portion of the tmRNA to add t...

Journal: :Nucleic acids research 1999
Jef Rozenski Pamela F. Crain James A. McCloskey

The RNA Modification Database (http://medlib.med.utah.edu/RNAmods/) provides a comprehensive listing of naturally modified nucleosides in RNA. Each file includes: chemical structure; common name and symbol; type(s) of RNA in which found and corresponding phylogenetic distribution; Chemical s registry number and index name; and initial literature citations for structure characterization and chem...

2017
Sylvie Nonin-Lecomte Brice Felden Frédéric Dardel

The tmRNA pseudoknot PK1 is essential for bacterial trans-translation, a ribosomal rescue mechanism. We report the solution structure of PK1 from Aquifex aeolicus which, despite an unprecedented small number of nulcleotides and thus an unprecented compact size, displays a very high thermal stability. Several unusual structural features account for these properties and indicate that PK1 belongs ...

Journal: :RNA biology 2005
Hannes Luidalepp Marc Hallier Brice Felden Tanel Tenson

Trans-translation is a process that recycles ribosomes stalled on problematic mRNAs. tmRNA, coded by the DeltassrA gene, is a major component of trans-translation. Bacteria lacking tmRNA are more sensitive to several inhibitors of protein synthesis when compared to a wild type strain. We measured bacterial growth of the DeltassrA and wild type strains in Escherichia coli in the presence of 14 a...

Journal: :EMBO reports 2009
Sylvie Nonin-Lecomte Noella Germain-Amiot Reynald Gillet Marc Hallier Luc Ponchon Frédéric Dardel Brice Felden

Tight recognition of codon-anticodon pairings by the ribosome ensures the accuracy and fidelity of protein synthesis. In eubacteria, translational surveillance and ribosome rescue are performed by the 'tmRNA-SmpB' system (transfer messenger RNA-small protein B). Remarkably, entry and accommodation of aminoacylated-tmRNA into stalled ribosomes occur without a codon-anticodon interaction but in t...

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