UNLABELLED ArrayFusion annotates conventional CGH results and various types of microarray data from a range of platforms (cDNA, expression, exon, SNP, array-CGH and ChIP-on-chip) and converts them into standard formats which can be visualized in genome browsers (Affymetrix Integrated Genome Browser and GBrowse in the HapMap Project). Converted files can then be imported simultaneously into a si...

MOTIVATION Gene regulation involves complicated mechanisms such as cooperativity between a set of transcription factors (TFs). Previous studies have used target genes shared by two TFs as a clue to infer TF-TF interactions. However, this task remains challenging because the target genes with low binding affinity are frequently omitted by experimental data, especially when a single strict thresh...

Optical Network-on-Chip (ONoC) is a promising emerging technology, which can solve the bottlenecks faced by electrical on-chip interconnection. However, the existing proposals of ONoC are mostly built on fixed topologies, which are not flexible enough to support various applications. To make full use of the limited resource and provide a more efficient approach for resource allocation, RONoC (R...

With the increasing complexity of Multi-Core System-on-Chip (MCSoC) and its communications requirement, Network-on-Chip (NoC) has emerged as a solution of nonscalable shared bus schemes currently used in MCSoC implementation. Recently, a new NoC structure based on WKrecursive network was analyzed and compared to 2D Mesh structure based on several performance metrics such as packet losses, throu...

ChIP-seq is increasingly being used for genome-wide profiling of histone modification marks. It is of particular importance to compare ChIP-seq data of two different conditions, such as disease vs. control, and identify regions that show differences in ChIP enrichment. We have developed a powerful and easy to use program, called diffReps, to detect those differential sites from ChIP-seq data, w...