نتایج جستجو برای: dalgarno sequences

تعداد نتایج: 212463  

Journal: :The Journal of Cell Biology 1994
S P Mayfield A Cohen A Danon C B Yohn

Translational regulation is a key modulator of gene expression in chloroplasts of higher plants and algae. Genetic analysis has shown that translation of chloroplast mRNAs requires nuclear-encoded factors that interact with chloroplastic mRNAs in a message-specific manner. Using site-specific mutations of the chloroplastic psbA mRNA, we show that RNA elements contained within the 5' untranslate...

2015
Scarlet S. Shell Jing Wang Pascal Lapierre Mushtaq Mir Michael R. Chase Margaret M. Pyle Richa Gawande Rushdy Ahmad David A. Sarracino Thomas R. Ioerger Sarah M. Fortune Keith M. Derbyshire Joseph T. Wade Todd A. Gray Patrick H. Viollier

RNA-seq technologies have provided significant insight into the transcription networks of mycobacteria. However, such studies provide no definitive information on the translational landscape. Here, we use a combination of high-throughput transcriptome and proteome-profiling approaches to more rigorously understand protein expression in two mycobacterial species. RNA-seq and ribosome profiling i...

Journal: :Nucleic acids research 1994
J Rinke-Appel N Jünke R Brimacombe I Lavrik S Dokudovskaya O Dontsova A Bogdanov

mRNA analogues containing several 4-thiouridine (thio-U) residues at selected positions were prepared by T7-transcription. The spacer region between the Shine-Dalgarno sequence and the AUG codon consisted of four or eight bases with a single thio-U at a variable position; alternatively, cro-mRNA analogues were used carrying the thio-U substituted spacer sequence UUGU. The mRNAs were bound to E....

Journal: :Genome research 2003
Gila Lithwick Hanah Margalit

Protein expression in the cell is affected by various sequence-dependent features. Several such sequence-dependent features have been individually studied,yet they have not been compared quantitatively in terms of their relative influence on protein expression,and a hierarchy of these elements has not been determined. Here we present a quantitative analysis examining sequence-dependent features...

Journal: :Journal of bacteriology 1997
C J Wu G R Janssen

The chloramphenicol acetyltransferase (cat) gene from Streptomyces acrimycini encodes a leaderless mRNA. Expression of the cat coding sequence as a leaderless mRNA from a modified lac promoter resulted in chloramphenicol resistance in Escherichia coli. Transcript mapping with nuclease S1 confirmed that the 5' end of the cat message initiated at the A of the AUG translational start codon. Site-d...

Journal: :Proceedings of the National Academy of Sciences 2007

Journal: :The Journal of Cell Biology 1998
Richard K. Bruick Stephen P. Mayfield

The 5' untranslated region of the chloroplast psbA mRNA, encoding the D1 protein, is processed in Chlamydomonas reinhardtii. Processing occurs just upstream of a consensus Shine-Dalgarno sequence and results in the removal of 54 nucleotides from the 5' terminus, including a stem-loop element identified previously as an important structure for D1 expression. Examination of this processing event ...

Journal: :Nucleic acids research 2000
A R Pavlov J D Karam

The DNA-binding DNA polymerase (gp43) of phage T4 is also an RNA-binding protein that represses translation of its own mRNA. Previous studies implicated two segments of the untranslated 5'-leader of the mRNA in repressor binding, an RNA hairpin structure and the adjacent RNA to the 3' side, which contains the Shine-Dalgarno sequence. Here, we show by in vitro gp43-RNA binding assays that both t...

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