نتایج جستجو برای: ffpe

تعداد نتایج: 1491  

2012
Paula R. Almeida Caroline P. Andrade Laura L. Almeida Luiz G.S. Oliveira Luiza A. Castro Priscila Zlotowski Sérgio C. da Silva David Driemeier

Almeida P.R., Andrade C.P., Almeida L.L., Oliveira L.G.S., Castro L.A., Zlotowski P., Silva S.C. & Driemeier D. 2012. Nested-PCR for the detection of Mycoplasma hyopneumoniae in bronchial alveolar swabs, frozen tissues and formalin-fixed paraffin-embedded swine lung samples: Comparative evaluation with immunohistochemical findings and histological features. Pesquisa Veterinária Brasileira 32(8)...

2017
Chinnawut Suriyonplengsaeng Charungthai Dejthevaporn Chaiyos Khongkhatithum Suda Sanpapant Nattha Tubthong Koset Pinpradap Nippa Srinark Jariya Waisayarat

BACKGROUND The analysis of fresh frozen muscle specimens is standard following routine muscle biopsy, but this service is not widely available in countries with limited medical facilities, such as Thailand. Nevertheless, immunohistochemistry (IHC) analysis is essential for the diagnosis of patients with a strong clinical suspicion of muscular dystrophy, in the absence of mutations detected by m...

2012
John D. Morlan Kunbin Qu Dominick V. Sinicropi

We report a method for Selective Depletion of abundant RNA (SDRNA) species from Human total RNA isolated from formalin-fixed, paraffin-embedded (FFPE) tissue, here demonstrating removal of ribosomal and mitochondrial transcripts from clinical FFPE tissue RNA archived up to 20 years. Importantly, SDRNA removes 98% of targeted RNAs while preserving relative abundance profiles of non-targeted RNAs...

Journal: :Frontiers in bioscience 2012
Liselle Bovell Chandrakumar Shanmugam Venkat R Katkoori Bin Zhang Emily Vogtmann William E Grizzle Upender Manne

MicroRNAs (miRNAs) have prognostic and therapeutic value for colorectal cancers RCs). Although formalin-fixed paraffin-embedded (FFPE) tissues are available for biomarker studies, the stability of miRNAs in these tissues stored for long periods (more than 20 years) is unknown. The present effort involved analysis of 345 FFPE CRC tissues, stored for 6 to 28 years (1982-2004), for the expression ...

Journal: :Histopathology 2014
Matt van de Rijn Xiangqian Guo Robert T Sweeney Andrew H Beck Robert B West

Sarcomas of soft tissue and bone are rare neoplasms that can be separated into a large number of different diagnostic entities. Over the years, a number of diagnostic markers have been developed that aid pathologists in reaching the appropriate diagnoses. Many of these markers are sarcoma-specific proteins that can be detected by immunohistochemistry in formalin-fixed, paraffin-embedded (FFPE) ...

Journal: :Cancer genomics & proteomics 2016
Asmaa Al-Attas Mourad Assidi Jaudah Al-Maghrabi Ashraf Dallol Hans-Juergen Schulten Muhammad Abu-Elmagd Adeel Chaudhary Adel Abuzenadah Bruce Budowle Abdelbaset Buhmeida Mohammed Al-Qahtani

BACKGROUND/AIM To date, the conventional formalin-fixed, paraffin-embedded (FFPE) technique is the gold-standard for preserving histomorphology. Once FFPE tissues are stained, slides are routinely archived along with their blocks at biobanks/hospitals. However, the reuse of fixed and stained biospecimens as DNA source is not a common routine practice worldwide and, thus, indicates the need of s...

Journal: :Clinical chemistry 2006
Jakob Stenman Annukka Paju Oso Rissanen Tuomas Tenkanen Caj Haglund Jari Räsänen Jarmo Salo Ulf-Håkan Stenman Arto Orpana

BACKGROUND For gene-expression analysis, which is anticipated to play an important role in classification of tumors and premalignant conditions, PCR-based quantitative assays must have increased diagnostic quantitative accuracy and reproducibility and enable analysis of gene expression in formalin-fixed paraffin-embedded (FFPE) tissue samples. METHODS We developed a reverse transcription-PCR-...

2012
Susan Hariri Martin Steinau Allen Rinas Julia W. Gargano Christina Ludema Elizabeth R. Unger Alicia L. Carter Kathy L. Grant Melanie Bamberg James E. McDermott Lauri E. Markowitz Noel T. Brewer Jennifer S. Smith

BACKGROUND HPV typing using formalin fixed paraffin embedded (FFPE) cervical tissue is used to evaluate HPV vaccine impact, but DNA yield and quality in FFPE specimens can negatively affect test results. This study aimed to evaluate 2 commercial assays for HPV detection and typing using FFPE cervical specimens. METHODS Four large North Carolina pathology laboratories provided FFPE specimens f...

Journal: :Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2017
David W Scott Pau Abrisqueta George W Wright Graham W Slack Anja Mottok Diego Villa Pedro Jares Hilka Rauert-Wunderlich Cristina Royo Guillem Clot Magda Pinyol Merrill Boyle Fong Chun Chan Rita M Braziel Wing C Chan Dennis D Weisenburger James R Cook Timothy C Greiner Kai Fu German Ott Jan Delabie Erlend B Smeland Harald Holte Elaine S Jaffe Christian Steidl Joseph M Connors Randy D Gascoyne Andreas Rosenwald Louis M Staudt Elias Campo Lisa M Rimsza

Purpose Mantle cell lymphoma is an aggressive B-cell neoplasm that displays heterogeneous outcomes after treatment. In 2003, the Lymphoma/Leukemia Molecular Profiling Project described a powerful biomarker-the proliferation signature-using gene expression in fresh frozen material. Herein, we describe the training and validation of a new assay that measures the proliferation signature in RNA der...

2014
Yan Ma Ranjana Ambannavar James Stephans Jennie Jeong Andrew Dei Rossi Mei-Lan Liu Adam J. Friedman Jason J. Londry Richard Abramson Ellen M. Beasley Joffre Baker Samuel Levy Kunbin Qu

The identification of gene fusions promises to play an important role in personalized cancer treatment decisions. Many rare gene fusion events have been identified in fresh frozen solid tumors from common cancers employing next-generation sequencing technology. However the ability to detect transcripts from gene fusions in RNA isolated from formalin-fixed paraffin-embedded (FFPE) tumor tissues,...

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