Throughout the last decade, we have seen much progress towards characterising and computing the minimum hybridisation number for a set P of rooted phylogenetic trees. Roughly speaking, this minimum quantifies the number of hybridisation events needed to explain a set of phylogenetic trees by simultaneously embedding them into a phylogenetic network. From a mathematical viewpoint, the notion of ...

To clarify the chronologic genetic diversity of coxsackievirus A16 (CV-A16) strains associated with hand, foot, and mouth disease (HFMD) epidemics in a restricted area and their genetic relation with those isolated in other areas, we investigated the genetic diversity of the 129 CV-A16 strains associated with HFMD epidemics in Fukushima, Japan, from 1983 to 2003, and compared their genetic rela...

apple stem pitting virus (aspv) is one of the most common viruses of apple and pear trees. during 2012 to 2013, a total of 1053 symptomatic and asymptomatic leaf samples were collected from orchards in nine provinces of iran. aspv infection was detected by das-elisa and pcr in 54 samples (5.12%) from seven provinces. based on the geographical origin, 22 representative isolates were selected for...

veritable identification and differentiation of avian species is a vital step in conservative, taxonomic, forensic, legal and other ornithological interventions. therefore, this study involved the application of molecular approach to identify some avian species i.e. chicken (gallus gallus), muskovy duck (cairina moschata), japanese quail (coturnix japonica), laughing dove (streptopelia senegale...

to study molecular evolutionary characteristics and genetics of beet necrotic yellow vein virus (bnyvv) isolates population from iran, nucleotide sequences of p25 and coat protein (cp) were determined and the amino acids sequences thus deduced were analyzed using phylogenetic and population genetics methods. a survey of bnyvv in iran indicated the infection of 288 collected samples out of 392 s...

backgrounds and objectives: classified as low pathogenic avian influenza (lpai) viruses, the h9n2 subtype causes severe respiratory disease in poultry farms and occasional respiratory disease in humans. in this study, the neuraminidase (na) gene of three avian influenza (ai) h9n2 strains isolated from poultry farms in iran during 2010-11, as well as other reported iranian h9n2 isolates, were ge...

background and aims: avian influenza (ai) h9n2 subtype was first reported to infect turkeys in the united states in 1966 and has been panzootic in eurasia. in iran, the h9n2 virus was first isolated from broiler chickens in 1998 in ghazvin province and it is the most prevalent subtype of influenza virus in poultry industry in iran at the present time. materials and methods: in this study, we se...

Estimating effects of nitrogen (N) deposition is essential for understanding human impacts on biodiversity. However, studies relating atmospheric N deposition to plant diversity are usually restricted to small plots of high conservation value. Here, we used data on 381 randomly selected 1 km(2) plots covering most habitat types of Central Europe and an elevational range of 2900 m. We found that...

The phylogenetic position of Gnetales is one of the most contentious issues in the seed plant systematics. To elucidate the Gnetales position, an improved amino acid substitution matrix was estimated based on 64 chloroplast (cp) genomes and was applied to cp genome data including all three lineages of Gnetales in maximum likelihood analyses of proteins. Although the initial analysis strongly su...