Volumetric change in glioblastoma multiforme (GBM) over time is a critical factor in treatment decisions. Typically, the tumor volume is computed on a slice-by-slice basis using MRI scans obtained at regular intervals. (3D)Slicer - a free platform for biomedical research - provides an alternative to this manual slice-by-slice segmentation process, which is significantly faster and requires less...

grapes are among the world most planted horticultural crops. since the last century, attempts have been made to improve the quality of grapes in the world. meanwhile, the necessity of having knowledge about the history of progenies families led to the link between genealogy and breeding. considering some previous mislabeling, in order to find out the accuracy of the controlled crosses as well a...

Three-dimensional (3D) liver tumor segmentation from Computed Tomography (CT) images is a prerequisite for computer-aided diagnosis, treatment planning, and monitoring of liver cancer. Despite many years of research, 3D liver tumor segmentation remains a challenging task. In this paper, an efficient semiautomatic method was proposed for liver tumor segmentation in CT volumes based on improved f...

Accurate spine segmentation allows for improved identification and quantitative characterization of abnormalities of the vertebra, such as vertebral fractures. However, in existing automated vertebra segmentation methods on computed tomography (CT) images, leakage into nearby bones such as ribs occurs due to the close proximity of these visibly intense structures in a 3D CT volume. To reduce th...

Thyroid nodule segmentation is a hard task due to different echo structures, textures and echogenicities in ultrasound (US) images as well as speckle noise. Currently, a typical clinical evaluation involves the manual, approximate measurement in two section planes in order to obtain an estimate of the nodule’s size. The aforementioned nodule attributes are recorded on paper. We propose instead ...

Brain lesion segmentation is a challenging biomedical problem. Here we present a convolutional neural network that produces a semantic segmentation of brain tumors, capable of processing volumetric information from multiple MRI modalities at the same time. This results in the ability to learn from small training datasets and highly imbalanced data. We present a new architecture with three paral...

Retinal vessel segmentation is an indispensable step for automatic detection of retinal diseases with fundoscopic images. Though many approaches have been proposed, existing methods tend to miss fine vessels or allow false positives at terminal branches. Let alone undersegmentation, over-segmentation is also problematic when quantitative studies need to measure the precise width of vessels. In ...

In this paper, an automatic knowledge-based framework for level set segmentation of 3D calvarial tumors from Computed Tomography images is presented. Calvarial tumors can be located in both soft and bone tissue, occupying wide range of image intensities, making automatic segmentation and computational modeling a challenging task. The objective of this study is to analyze and validate different ...