نتایج جستجو برای: ffpe

تعداد نتایج: 1491  

2015
Johannes Betge Grainne Kerr Thilo Miersch Svenja Leible Gerrit Erdmann Christian L. Galata Tianzuo Zhan Timo Gaiser Stefan Post Matthias P. Ebert Karoline Horisberger Michael Boutros Jeong-Sun Seo

Next generation sequencing (NGS) is an emerging technology becoming relevant for genotyping of clinical samples. Here, we assessed the stability of amplicon sequencing from formalin-fixed paraffin-embedded (FFPE) and paired frozen samples from colorectal cancer metastases with different analysis pipelines. 212 amplicon regions in 48 cancer related genes were sequenced with Illumina MiSeq using ...

Journal: :research in molecular medicine 0
mahboube ganji-arjenaki sku mojtaba emadi-baygi skum hossein teimori sku maryam moradi-chaleshtori skum valliollah mehrzad iums

background: as the third most frequent cause of cancer death, breast cancer is a common disease worldwide. most of the patients are being diagnosed in the stage that conventional treatments are not effective, and invasion and metastases lead to death. therefore, identification of novel molecular markers to improve early diagnosis, prognosis and treatment of the breast cancer is a necessity. zin...

Journal: :Methods 2010
Ditte Andreasen Jacob U Fog William Biggs Jesper Salomon Ina K Dahslveen Adam Baker Peter Mouritzen

microRNAs are small regulatory RNAs that are currently emerging as new biomarkers for cancer and other diseases. In order for biomarkers to be useful in clinical settings, they should be accurately and reliably detected in clinical samples such as formalin fixed paraffin embedded (FFPE) sections and blood serum or plasma. These types of samples represent a challenge in terms of microRNA quantif...

Journal: :BioTechniques 2006
Wen Yang Botoul Maqsodi Yunqing Ma Son Bui Kimberly L Crawford Gary K McMaster Frank Witney Yuling Luo

Formalin-fixed, paraffin-embedded (FFPE) tissues represent an important source of archival materials for gene expression profiling. We report here the development of a modified branch DNA assay that allows direct quantification of messenger RNA (mRNA) transcripts in homogenates from FFPE tissue sections without the need for RNA isolation and reverse transcription into cDNA. Formalin fixation es...

2018
Gisele R. Gouveia Suzete C. Ferreira Sheila A. C. Siqueira Juliana Pereira

Formalin-fixed paraffin-embedded (FFPE) tissues are an important sample source for ret‐ rospective studies. Despite its ability to preserve proteins and cell morphology, formalin hinders molecular biology tests since it fragments and chemically modifies nucleic acids, especially RNA. Although several studies describe techniques that allow extracting nu‐ cleic acids from FFPE tissues, so far the...

2014
Burcu Sengüven Emre Baris Tulin Oygur Mehmet Berktas

AIM Discussing a protocol involving xylene-ethanol deparaffinization on slides followed by a kit-based extraction that allows for the extraction of high quality DNA from FFPE tissues. METHODS DNA was extracted from the FFPE tissues of 16 randomly selected blocks. Methods involving deparaffinization on slides or tubes, enzyme digestion overnight or for 72 hours and isolation using phenol chlor...

2005

Microarray analysis of gene expression has proven to be a remarkable tool for biologists, and has the potential to be widely adopted by clinical researchers. One challenge to clinical applications has been the need for high quality, cryopreserved RNA for standard microarray sample labeling. Such samples are of limited availability and must be collected over the course of a disease. In contrast,...

2015
Filip Janku Bart Claes Helen J. Huang Gerald S. Falchook Benoit Devogelaere Mark Kockx Isabelle Vanden Bempt Martin Reijans Aung Naing Siqing Fu Sarina A. Piha-Paul David S. Hong Veronica R. Holley Apostolia M. Tsimberidou Vanda M. Stepanek Sapna P. Patel E. Scott Kopetz Vivek Subbiah Jennifer J. Wheler Ralph G. Zinner Daniel D. Karp Rajyalakshmi Luthra Sinchita Roy-Chowdhuri Erwin Sablon Funda Meric-Bernstam Geert Maertens Razelle Kurzrock

Fast and accurate diagnostic systems are needed for further implementation of precision therapy of BRAF-mutant and other cancers. The novel IdyllaTMBRAF Mutation Test has high sensitivity and shorter turnaround times compared to other methods. We used Idylla to detect BRAF V600 mutations in archived formalin-fixed paraffin-embedded (FFPE) tumor samples and compared these results with those obta...

Journal: :The Journal of molecular diagnostics : JMD 2017
Assunta De Rienzo Robert W Cook Jeff Wilkinson Corinne E Gustafson Waqas Amin Clare E Johnson Kristen M Oelschlager Derek J Maetzold John F Stone Michael D Feldman Michael J Becich Beow Y Yeap William G Richards Raphael Bueno

A molecular test performed using fresh-frozen tissue was proposed for use in the prognosis of patients with pleural mesothelioma. The accuracy of the test and its properties was assessed under Clinical Laboratory Improvement Amendments-approved guidelines using FFPE tissue from an independent multicenter patient cohort. Concordance studies were performed using matched frozen and FFPE mesothelio...

2016
Robert Fred Henry Walter Robert Werner Claudia Vollbrecht Thomas Hager Elena Flom Daniel Christian Christoph Jan Schmeller Kurt Werner Schmid Jeremias Wohlschlaeger Fabian Dominik Mairinger

BACKGROUND Neuroendocrine lung cancer (NELC) represents 25% of all lung cancer cases and large patient collectives exist as formalin-fixed, paraffin-embedded (FFPE) tissue only. FFPE is controversially discussed as source for molecular biological analyses and reference genes for NELC are poorly establishes. MATERIAL AND METHODS Forty-three representative FFPE-specimens were used for mRNA expr...

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