August 13, 2013 Type Package Title Multiple Testing for Hypotheses with Hierarchical or Group Structure Version 1.0.4 Date 2013-08-12 Author Kris Sankaran Maintainer Kris Sankaran Description Performs multiple testing corrections that take specific structure of hypotheses into account. License GPL-2 Depends multtest, igraph, Rgraphviz, RColorBrewer, classInt, methods Sugge...

In this paper, we exploit our taxonomy that allows the maintainer to catalog classes based on the characteristics of the class. The characteristics of a class include the properties of data items and methods as well as the relationships with other classes. We construct a tool that uses the taxonomy to catalog each class in an application. We use the tool to track changes across multiple release...

October 21, 2009 Type Package Title Spherical k-Means Clustering Version 0.1-2 Author Kurt Hornik, Ingo Feinerer, Martin Kober Maintainer Kurt Hornik Description Algorithms to compute spherical k-means partitions. Features several methods, including a genetic and a simple fixed-point algorithm and an interface to the CLUTO vcluster program. License GPL-2 Imports slam...

February 20, 2015 Type Package Title Machine Learning-based Differential Network Analysis of Transcriptome Data Version 1.1 Date 2013-11-18 Author Chuang Ma and Xiangfeng Wang Maintainer Chuang Ma Depends R (>= 2.15.1), snowfall (>= 1.84-4), igraph (>= 0.6.6), rsgcc (>= 1.0.6), e1071 (>= 1.6-1), randomForest(>= 4.6-7) Imports pROC (>= 1.5.4), ROCR(>= 1.0-5) Suggests big...

BugReports https://bugs.r-project.org NeedsCompilation yes Author José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), R-core [aut, cre] Maintainer R-core Reposi...

March 27, 2015 Version 1.8.17 Date 2015-03-27 Title Analysis of Habitat Selection by Animals Author Clement Calenge, contributions from Mathieu Basille, Stephane Dray and Scott Fortmann-Roe Maintainer Clement Calenge Depends R (>= 2.10.0), ade4, tkrplot, shapefiles, sp, graphics Suggests spatstat, MASS, CircStats Description A collection of tools for the analysis...

October 4, 2013 Type Package Title iASeq: integrating multiple sequencing datasets for detecting allele-specific events Version 1.4.0 Date 2012-02-13 Author Yingying Wei, Hongkai Ji Maintainer Yingying Wei Description It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across stud...