Prediction of protein catalytic residues provides useful information for the studies of protein functions. Most of the existing methods combine both structure and sequence information but heavily rely on sequence conservation from multiple sequence alignments. The contribution of structure information is usually less than that of sequence conservation in existing methods. We found a novel struc...

We examine the problem of transmembrane protein structure determination. Like many other questions that arise in biological research, this problem cannot be addressed by traditional laboratory experimentation alone. An approach that integrates experiment and computation is required. We investigate a procedure which states the transmembrane protein structure determination problem as a bound cons...

W examine the problem of transmembrane protein structure determination. Like many questions that arise in biological research, this problem cannot be addressed generally by traditional laboratory experimentation alone. Instead, an approach that integrates experiment and computation is required. We formulate the transmembrane protein structure determination problem as a bound-constrained optimiz...

Background and Aims: Since the produced recombinant proteins by molecular genetics techniques commonly have some limitations in the application, chimeric protein are introduced. Chimeric proteins have found widespread application for the study of protein folding, structure stability, function and immunogenisity. Methods: According to the known Immunomodulatory effect and structure of HSP70 mole...

Clostridium botulinum type A (BoNT/A) produces a neurotoxin recently found to be useful as an injectable drug for the treatment of abnormal muscle contractions. The catalytic domain of this toxin which is responsible for the main toxin activity is a zinc metalloprotease that inhibits the release of neurotransmitter mediators in neuromuscular junctions. A cell penetrating cationic peptide, Tat, ...

It is known that protein dimers form in a solution before proteinase K crystallization. Simulations of the dimer, i.e., precursor cluster crystal, at different temperatures, show molecular dynamics methods make it possible to trace spatial and temporal changes internal structure crystal-forming dimer when heated temperatures far from denaturation. Based on results modeling, stability was evalua...

We discuss the formation of pulsars with massive companions in eccentric orbits. We demonstrate that the probability for a non-recycled radio pulsar to have a white dwarf as a companion is comparable to that of having an old neutron star as a companion. Special emphasis is given to PSR B1820–11 and PSR B2303+46. Based on population synthesis calculations we argue that PSR B1820–11 and PSR B2303...

infectious bursal disease virus (ibdv) is the causative agent of gumboro disease, an infectious disease of global economic importance in poultry. structural protein vp2 of ibdv is the most frequently studied protein due to its significant roles in virus attachment, protective immunity, and serotype specificity. the objective of the present study was to improve the expression of hypervariable re...