MOTIVATION Despite many successes of conventional DNA sequencing methods, some DNAs remain difficult or impossible to sequence. Unsequenceable regions occur in the genomes of many biologically important organisms, including the human genome. Such regions range in length from tens to millions of bases, and may contain valuable information such as the sequences of important genes. The authors hav...

Identifying differentially expressed (DE) genes between cancer and normal tissues is of basic importance for studying cancer mechanisms. However, current methods, such as the commonly used Significance Analysis of Microarrays (SAM), are biased to genes with low expression levels. Recently, we proposed an algorithm, named the pairwise difference (PD) algorithm, to identify highly expressed DE ge...

An Intelligent RAM for Nearest Neighbor Database Searching Aaron Lipman and Woodward Yang Abstract The nearest neighbor algorithm is well suited to an IRAM implementation, given its high bandwidth requirement between memory and processing. We have designed and implemented the Smart Access Memory (SAM) chip to retrieve the k nearest neighbors to a query point in a database of example data vector...

This study is executed to develop probiotics which produce S-adenosyl-L-methionine (SAM), a methyl group donor of the 5-methyltetrahydrofolate methylation reaction within the animal cell. SAM is an essential substance for the synthesis, activation, and metabolism of hormones, neurotransmitters, nucleic acids, phospholipids, and cell membranes of animals. The SAM is also known as a nutritional s...

OBJECTIVES We set out to determine if intraoperative pre-bypass transoesophageal echocardiography could assist in predicting which patients are at greatest risk for systolic anterior motion (SAM) after mitral valve repair (MVR). METHODS Three hundred and seventy-five consecutive patients who underwent reconstructive MVR surgery for degenerative disease were included. Data were collected using...

To understand how S-adenosylmethionine (SAM) concentrations fluctuate in normal and cancerous cells, particularly normal and cancerous liver cells, we have developed a novel real-time immunoassay to simultaneously measure methionine adenosyltransferase (MAT) activity and SAM levels. This method integrates the MAT-catalyzed reaction of L-Met and ATP to produce SAM and a highly sensitive immunoas...

The S-adenosylmethionine-1 (SAM-I) riboswitch mediates expression of proteins involved in sulfur metabolism via formation of alternative conformations in response to binding by SAM. Models for kinetic trapping of the RNA in the bound conformation require annealing of nonadjacent mRNA segments during a transcriptional pause. The entropic cost required to bring nonadjacent segments together shoul...

The shoot apical meristem (SAM) ensures continuous plant growth and organogenesis. In LD 30 °C, plants lacking AtFTSH4, an ATP-dependent mitochondrial protease that counteracts accumulation of internal oxidative stress, exhibit a puzzling phenotype of premature SAM termination. We aimed to elucidate the underlying cellular and molecular processes that link AtFTSH4 with SAM arrest. We studied At...

Severe necrotizing pancreatitis occurs in young female mice fed a choline-deficient and ethionine-supplemented (CDE) diet. Although the mechanism of the pancreatitis is unknown, one consequence of this diet is depletion of hepatic S-adenosylmethionine (SAM). SAM formation is catalyzed by methionine adenosyltransferases (MATs), which are encoded by liver-specific (MAT1A) and non-liver-specific (...

The relationship between the El Niño Southern Oscillation (ENSO) and the Southern Hemisphere Annular Mode (SAM) is examined, with the goal of understanding how various strong SAM events modulate the ENSO teleconnection to the South Pacific (45 –70 S, 150 – 70 W). The focus is on multi-month, multi-event variations during the last 50 years. A significant (p \ 0.10) relationship is observed, most...