Abstract. Ermawati D, Panjono, Bintara S, Hartatik T. 2022. Diversity of partial sequence leptin gene (Exon 3) in crossbred cattle compared to GenBank database. Biodiversitas 23: 5614-5620. Genetic marker method that is often used select Single Polymorphism Nucleotide (SNP). Polymorphisms (SNP) has been found various candidate genes, one which the gene. Leptin a affects reproduction and weight....

Global climate change has made heat stress tolerance an important trait to be considered in breeding programs improve the resistance of productive animals unfavorable environmental conditions. The aim this study was know association between single nucleotide polymorphism (SNP) markers and through a genome-wide (GWAS). Where 95 Brown Swiss dairy cows have measured body temperatures, respiratory ...

Previous genetic studies of orangutans (Pongo spp.) have relied mainly upon mitochondrial DNA or microsatellite short tandem repeats (STR) for genomic genotyping analysis. Scientists yet to take advantage the closeness great apes humans analysis by using advanced techniques available human genotyping. To genotype at Tanjung Puting National Park, we developed a novel combination methyl-based mag...

ABBREVIATIONS: AFLP (Amplified Fragment Length Polymorphism); BAC (Bacterial Artificial Chromosome); CAPS (Cleaved Amplified Polymorphic Sequence); CPCSD (California Planting Cotton Seed Distributors); EST (Expressed Sequence Tag); FOV (Fusarium oxysporum f. sp. vasinfectum); FW (Fusarium Wilt); QTL (Quantitative Trait Locus); RAPD (Random Amplified Polymorphic DNA); RIL (Recombinant Inbred Lin...

background interleukin-16 (il-16) is an immunomodulatory cytokine, which plays an important role in some inflammatory and autoimmune diseases such as hepatitis b, which is a major health concern worldwide. objectives in this study, we aimed to investigate the plausible association between il-16 polymorphism and chronic hbv susceptibility in an iranian population. conclusions these findings show...

A case of pulmonary alveolar microlithiasis occurring in an inbred family is presented. A genome-wide analysis of the patient's genomic DNA using a high-density single nucleotide polymorphism (SNP) array revealed a small intragenetic mutation at SLC34A2. The results suggest that the high-density SNP array has the power to identify a recessive disease gene(s) even in the analysis of only a singl...

There are a number of in silico programs that use algorithms and external web sources to predict the effect of single nucleotide polymorphisms (SNPs). While many of these programs have been shown to predict accurately the effect of SNPs in functional areas of the gene, such as 5' upstream or coding regions, empiric research may be warranted to confirm the functional consequences of SNPs that ar...

Natural genetic material may shed light on gene expression mechanisms and aid in the detection of disorders. Single Nucleotide Polymorphism (SNP), small insertions deletions (indels), major chromosomal anomalies are all abnormality-related As a result, several methods have been applied to analyze DNA sequences, which constitutes one most critical aspects biological research. Thus, numerous math...

Abstract We used Double Digest Restriction site associated DNA sequencing (ddRAD) and Miseq to develop new geographically informative nuclear plastid SNP indel loci in Quercus robur Q. petraea . Genotypes derived from sequence data of 95 individuals two pools 20 each mongolica covering the distribution range species, were analysed select polymorphic within Germany Russia. successfully screened ...

This study attempted to infer the population structure of Japanese Black cattle by using genotype data on 33,063 genomewide single nucleotide polymorphism (SNP) markers totally 4,348 fattened steers slaughtered at carcass markets in Tokyo, Osaka, Hyogo, Tottori, and Hiroshima prefectures. We evaluated allele frequency, heterozygosity, linkage disequilibrium, correlation phase, concordance among...