MOTIVATION For several decades, free energy minimization methods have been the dominant strategy for single sequence RNA secondary structure prediction. More recently, stochastic context-free grammars (SCFGs) have emerged as an alternative probabilistic methodology for modeling RNA structure. Unlike physics-based methods, which rely on thousands of experimentally-measured thermodynamic paramete...

Active control of heat flux can be realized with transformation optics (TO) thermal metamaterials. Recently, a new class of metamaterial tunable cells has been proposed, aiming to significantly reduce the difficulty of fabrication and to flexibly switch functions by employing several cells assembled on related positions following the TO design. However, owing to the integration and rotation of ...

Abstract: The evaluation of the thermodynamic performance of the mutual transformation of different kinds of exergy linked to the intensive thermodynamic parameters of the flow inside the ejector of a refrigeration system is undertaken. Two thermodynamic metrics, exergy produced and exergy consumed, are introduced to assess these transformations. Their calculation is based on the evaluation of ...

We report the partial phonon densities of states (DOS) of iron sulfide, a possible component of the rocky planet's core, measured by the 57Fe nuclear resonant inelastic x-ray scattering and calculate the total phonon DOS under pressure. From the phonon DOS, we drive thermodynamic parameters. A comparison of the observed and estimated compressibilities makes it clear that there is a large pure e...

The entropically based nonlinear Adam-Gibbs equation is discussed in the context of phenomenologies for nonlinear enthalpy relaxation within the glass transition temperature range. In many materials for which adequate data are available, the nonlinear Adam-Gibbs parameters are physically reasonable and agree with those obtained from linear relaxation data and thermodynamic extrapolations. Obser...

Original scientific paper The paper presents the possibility of electricity generation at the pressure reduction stations (PRS) in the conventional system of natural gas transmission and distribution. The main deficiency of the conventional system is its thermodynamic irreversibility, i.e. the loss of potential work that could be generated while reducing the gas pressure. Within the first part ...

Hybridization intensities of 30 distinct short duplex DNAs measured on spotted microarrays, were directly compared with thermodynamic stabilities measured in solution. DNA sequences were designed to promote formation of perfect match, or hybrid duplexes containing tandem mismatches. Thermodynamic parameters DeltaH degrees , DeltaS degrees and DeltaG degrees of melting transitions in solution we...

Let k be an algebraically closed field of characteristic exponent p ≥ 1. Let G be a connected reductive algebraic group over k and let g be the Lie algebra of G. Note that G acts on G and on g by the adjoint action and on g by the coadjoint action. (For any k-vector space V we denote by V ∗ the dual vector space.) Let GC be the reductive group over C of the same type as G. Let UG be the variety...

An L-DNA, the mirror-image isomer of natural DNA, has extraordinary nuclease resistance, and thus the molecules should be promising reagents for many applications, such as antisense technology. However, little is known about the structural and thermodynamic properties of DNAs with this modified nucleotide. In this study, we prepared the L-nucleotide (L-dA) and introduced it into oligodeoxyribon...

A. Huxley’s equations were used to determine the mechanical properties of muscle myosin II (MII) at the molecular level, as well as the probability of the occurrence of the different stages in the actin–myosin cycle. It was then possible to use the formalism of statistical mechanics with the grand canonical ensemble to calculate numerous thermodynamic parameters such as entropy, internal energy...