نتایج جستجو برای: wide association study

تعداد نتایج: 4492963  

2015
Manu J Dubin Pei Zhang Dazhe Meng Marie-Stanislas Remigereau Edward J Osborne Francesco Paolo Casale Philipp Drewe André Kahles Geraldine Jean Bjarni Vilhjálmsson Joanna Jagoda Selen Irez Viktor Voronin Qiang Song Quan Long Gunnar Rätsch Oliver Stegle Richard M Clark Magnus Nordborg

Epigenome modulation potentially provides a mechanism for organisms to adapt, within and between generations. However, neither the extent to which this occurs, nor the mechanisms involved are known. Here we investigate DNA methylation variation in Swedish Arabidopsis thaliana accessions grown at two different temperatures. Environmental effects were limited to transposons, where CHH methylation...

Journal: :Biostatistics 2010
Yik Y Teo

Genome-wide association studies (GWAS) have become the method of choice for investigating the genetic basis of common diseases and complex traits. The immense scale of these experiments is unprecedented, involving thousands of samples and up to a million variables. The careful execution of exploratory data analysis (EDA) prior to the actual genotype-phenotype association analysis is crucial as ...

2013
Carl Nettelblad

In genome-wide association studies, results have been improved through imputation of a denser marker set based on reference haplotypes and phasing of the genotype data. To better handle very large sets of reference haplotypes, pre-phasing with only study individuals has been suggested. We present a possible problem which is aggravated when pre-phasing strategies are used, and suggest a modifica...

2010
Oliver S. P. Davis Lee M. Butcher Sophia J. Docherty Emma L. Meaburn Charles J. C. Curtis Michael A. Simpson Leonard C. Schalkwyk Robert Plomin

Childhood general cognitive ability (g) is important for a wide range of outcomes in later life, from school achievement to occupational success and life expectancy. Large-scale association studies will be essential in the quest to identify variants that make up the substantial genetic component implicated by quantitative genetic studies. We conducted a three-stage genome-wide association study...

Journal: :Biochemical Society transactions 2011
Rita J Guerreiro John Hardy

In the present review, we look back at the recent history of GWAS (genome-wide association studies) in AD (Alzheimer's disease) and integrate the major findings with current knowledge of biological processes and pathways. These topics are essential for the development of animal models, which will be fundamental to our complete understanding of AD.

Journal: :Cancer genomics & proteomics 2009
Simone Picelli Susanna Von Holst Petra Wessendorf

High-penetrance mutations in a small group of genes have been identified as the causal agent of colorectal cancer (CRC) in high-risk families. Our understanding of the sporadic cases is, however, much more limited and only in the past two years have multicentric genome-wide association studies (GWAS) started to unravel the complex genetic architecture behind this common forms. To date, ten loci...

2013
Sang Hong Lee Naomi R. Wray

Genome-wide association studies (GWAS) are routinely conducted for both quantitative and binary (disease) traits. We present two analytical tools for use in the experimental design of GWAS. Firstly, we present power calculations quantifying power in a unified framework for a range of scenarios. In this context we consider the utility of quantitative scores (e.g. endophenotypes) that may be avai...

2014
Catarina Correia Yoan Diekmann Astrid M. Vicente José B. Pereira-Leal Emil Alexov

Hundreds of genetic variants have been associated to common diseases through genome-wide association studies (GWAS), yet there are limits to current approaches in detecting true small effect risk variants against a background of false positive findings. Here we addressed the missing heritability problem, aiming to test whether there are indeed risk variants within GWAS statistical noise and to ...

Journal: :Bioinformatics 2018
Thorhildur Juliusdottir Karina Banasik Neil R Robertson Richard Mott Mark I McCarthy

Summary Data integration and visualization help geneticists make sense of large amounts of data. To help facilitate interpretation of genetic association data we developed Toppar, a customizable visualization tool that stores results from association studies and enables browsing over multiple results, by combining features from existing tools and linking to appropriate external databases. Ava...

2016
Maggie Haitian Wang Rui Sun Junfeng Guo Haoyi Weng Jack Lee Inchi Hu Pak Chung Sham Benny Chung-Ying Zee

Epistasis plays an essential role in the development of complex diseases. Interaction methods face common challenge of seeking a balance between persistent power, model complexity, computation efficiency, and validity of identified bio-markers. We introduce a novel W-test to identify pairwise epistasis effect, which measures the distributional difference between cases and controls through a com...

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