نتایج جستجو برای: combinatorial library

تعداد نتایج: 162675  

Journal: :Journal of chemical information and computer sciences 2003
Kerby Shedden Julie Brumer Young Tae Chang Gustavo R. Rosania

Styryl dyes are fluorescent, lipophilic cations that have been used as specific labeling probes of mitochondria in living cells. For specific applications such as epifluorescence microscopy or flow cytometry, it is often desirable to synthesize fluorescent derivatives with optimized excitation, emission, and localization properties. Here, we present a chemoinformatic strategy suitable for multi...

Journal: :Neurocomputing 2017
Zhi-Yong Liu Jing-Jing Wang Xu Yang Shi-Hao Feng

LibCoopt is an open-source matlab code library which provides a general and convenient tool to approximately solve the combinatorial optimization problems on the set of partial permutation matrices, which are frequently encountered in computer vision, bioinformatics, social analysis, etc. To use the library, the user needs only to give the objective function and its gradient function associated...

Journal: :Biochemistry 2008
Adam L Garske Gheorghe Craciun John M Denu

Histone modifications modulate chromatin structure and function. A posttranslational modification-randomized, combinatorial library based on the first 21 residues of histone H4 was designed for systematic examination of proteins that interpret a histone code. The 800-member library represented all permutations of most known modifications within the N-terminal tail of histone H4. To determine it...

Journal: :Cancer research 2011
Benjamin J Moeller Richard L Sidman Renata Pasqualini Wadih Arap

Small molecule inhibitors of DNA repair are emerging as potent and selective anticancer therapies, but the sheer magnitude of the protein networks involved in DNA repair processes poses obstacles to discovery of effective candidate drugs. To address this challenge, we used a subtractive combinatorial selection approach to identify a panel of peptide ligands that bind DNA repair complexes. Suppo...

Journal: :Journal of chemical information and modeling 2008
Puneet Sharma Srinivasa M. Salapaka Carolyn L. Beck

In this paper, we propose an algorithm for the design of lead generation libraries required in combinatorial drug discovery. This algorithm addresses simultaneously the two key criteria of diversity and representativeness of compounds in the resulting library and is computationally efficient when applied to a large class of lead generation design problems. At the same time, additional constrain...

Journal: :Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2000
W Zheng S T Hung J T Saunders G L Seibel

Combinatorial library design is by nature a multicriterion problem. These criteria often include reagent diversity, product similarity to lead compounds and product novelty with respect to a corporate compound bank. More recently, developability and druglikeness have also attracted much attention in library design practices. To address this multicriterion design problem, we have developed a com...

Journal: :Journal of the American Society for Mass Spectrometry 2006
Sally-Ann Poulsen

A dynamic combinatorial library (DCL) screening approach is described that permits direct identification of the effective (from ineffective) combination of building blocks in the equilibrating DCL. The approach uses Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) together with sustained off-resonance irradiation collision activated dissociation (SORI-CAD) to detect noncov...

Journal: :Science and technology of advanced materials 2011
Kenjiro Fujimoto Keita Ikezawa Shigeru Ito

A powder library of layered Li(Ni,Co,Ti)O2 (Ni ≤ 0.8, Ti ≤ 0.2) compounds was prepared by electrostatic spray deposition. From powder x-ray diffraction patterns, most of the powder library sintered at 700 ○C was indexed as a single phase belonging to the space group R[Formula: see text]m. These results were almost identical to those obtained from a study by combinatorial exploration. We investi...

Journal: :Nature chemical biology 2009
Matthew A Clark Raksha A Acharya Christopher C Arico-Muendel Svetlana L Belyanskaya Dennis R Benjamin Neil R Carlson Paolo A Centrella Cynthia H Chiu Steffen P Creaser John W Cuozzo Christopher P Davie Yun Ding G Joseph Franklin Kurt D Franzen Malcolm L Gefter Steven P Hale Nils J V Hansen David I Israel Jinwei Jiang Malcolm J Kavarana Michael S Kelley Christopher S Kollmann Fan Li Kenneth Lind Sibongile Mataruse Patricia F Medeiros Jeffrey A Messer Paul Myers Heather O'Keefe Matthew C Oliff Cecil E Rise Alexander L Satz Steven R Skinner Jennifer L Svendsen Lujia Tang Kurt van Vloten Richard W Wagner Gang Yao Baoguang Zhao Barry A Morgan

Biochemical combinatorial techniques such as phage display, RNA display and oligonucleotide aptamers have proven to be reliable methods for generation of ligands to protein targets. Adapting these techniques to small synthetic molecules has been a long-sought goal. We report the synthesis and interrogation of an 800-million-member DNA-encoded library in which small molecules are covalently atta...

Journal: :Clinical and vaccine immunology : CVI 2006
Jinye Liu Hongxia Shao Yanlin Tao Bin Yang Lisheng Qian Xiaoli Yang Brian Cao Gengxi Hu Hiroshi Tachibana Xunjia Cheng

A combinatorial human immunoglobulin gene library was constructed from the peripheral lymphocytes of two patients who recovered from severe acute respiratory syndrome (SARS). The library was screened for the production of Fab antibody fragments to a recombinant spike protein of SARS-associated coronavirus (SARS-CoV). One Fab clone, AS3-3, reacted with the spike protein in an enzyme-linked immun...

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