نتایج جستجو برای: embedded ffpe

تعداد نتایج: 109988  

2015
Filip Janku Bart Claes Helen J. Huang Gerald S. Falchook Benoit Devogelaere Mark Kockx Isabelle Vanden Bempt Martin Reijans Aung Naing Siqing Fu Sarina A. Piha-Paul David S. Hong Veronica R. Holley Apostolia M. Tsimberidou Vanda M. Stepanek Sapna P. Patel E. Scott Kopetz Vivek Subbiah Jennifer J. Wheler Ralph G. Zinner Daniel D. Karp Rajyalakshmi Luthra Sinchita Roy-Chowdhuri Erwin Sablon Funda Meric-Bernstam Geert Maertens Razelle Kurzrock

Fast and accurate diagnostic systems are needed for further implementation of precision therapy of BRAF-mutant and other cancers. The novel IdyllaTMBRAF Mutation Test has high sensitivity and shorter turnaround times compared to other methods. We used Idylla to detect BRAF V600 mutations in archived formalin-fixed paraffin-embedded (FFPE) tumor samples and compared these results with those obta...

2016
Robert Fred Henry Walter Robert Werner Claudia Vollbrecht Thomas Hager Elena Flom Daniel Christian Christoph Jan Schmeller Kurt Werner Schmid Jeremias Wohlschlaeger Fabian Dominik Mairinger

BACKGROUND Neuroendocrine lung cancer (NELC) represents 25% of all lung cancer cases and large patient collectives exist as formalin-fixed, paraffin-embedded (FFPE) tissue only. FFPE is controversially discussed as source for molecular biological analyses and reference genes for NELC are poorly establishes. MATERIAL AND METHODS Forty-three representative FFPE-specimens were used for mRNA expr...

2016
Xi Chen Natasha G. Deane Keeli B. Lewis Jiang Li Jing Zhu M. Kay Washington R. Daniel Beauchamp

The prognosis of colorectal cancer (CRC) stage II and III patients remains a challenge due to the difficulties of finding robust biomarkers suitable for testing clinical samples. The majority of published gene signatures of CRC have been generated on fresh frozen colorectal tissues. Because collection of frozen tissue is not practical for routine surgical pathology practice, a clinical test tha...

Journal: :Romanian journal of morphology and embryology = Revue roumaine de morphologie et embryologie 2015
Adela Corina Nechifor-Boilă Andrada Loghin Victor Vacariu Vasile Bogdan Halaţiu Angela Borda

Optimal recovery of nucleic acids from formalin-fixed paraffin-embedded (FFPE) tissues is highly dependent on a series of pre-extraction steps, mainly related (but not limited) to fixation. The aim of our study was to investigate if the storage period of the FFPE blocks had a significant effect on the isolated DNA. We examined the quantity and purity of the isolated DNA from 83 FFPE blocks, cor...

2012
Julu Bhatnagar Marlene DeLeon-Carnes Kathryn L. Kellar Kakali Bandyopadhyay Zoi-Anna Antoniadou Wun-Ju Shieh Christopher D. Paddock Sherif R. Zaki

Clostridium sordellii and Clostridium perfringens are infrequent human pathogens; however, the case-fatality rates for the infections are very high, particularly in obstetric C. sordellii infections (>90%). Deaths from Clostridium sordellii and Clostridium perfringens toxic shock (CTS) are sudden, and diagnosis is often challenging. Formalin-fixed, paraffin-embedded (FFPE) tissues usually are t...

Journal: :Clinical cancer research : an official journal of the American Association for Cancer Research 2009
Fred T Bosman Pu Yan Sabine Tejpar Roberto Fiocca Eric Van Cutsem Richard D Kennedy Daniel Dietrich Arnaud Roth

PURPOSE We evaluated the feasibility of biomarker development in the context of multicenter clinical trials. EXPERIMENTAL DESIGN Formalin-fixed, paraffin-embedded (FFPE) tissue samples were collected from a prospective adjuvant colon cancer trial (PETACC3). DNA was isolated from tumor as well as normal tissue and used for analysis of microsatellite instability, KRAS and BRAF genotyping, UGT1A...

Journal: :Microscopy research and technique 2009
Tomoatsu Kaneko Takashi Okiji Reika Kaneko Hideaki Suda Jacques E Nör

Laser capture microdissection (LCM) allows microscopic procurement of specific cell types from tissue sections that can then be used for gene expression analysis. In conventional LCM, frozen tissues stained with hematoxylin are normally used to the molecular analysis. Recent studies suggested that it is possible to carry out gene expression analysis of formaldehyde-fixated paraffin embedded (FF...

2015
Jiayi Zheng Fen Li Jinfen Liu Zhiwei Xu Haibo Zhang Qihua Fu Jian Wang Kun Sun

The purposes of this study are to investigate somatic NKX2-5 mutations in Chinese children with congenital heart disease (CHD) and assess the reliability of somatic mutation detection in formalin-fixed, paraffin-embedded (FFPE) tissues. The study cohort included frozen and FFPE cardiac tissues as well as blood samples from 85 Chinese children with CHD who had the cardiac operations. The right a...

Journal: :Molecular Cytogenetics 2021

Abstract Background The OncoScan microarray assay (OMA) using highly multiplexed molecular inversion probes for single nucleotide polymorphism (SNP) loci enabled the detection of cytogenomic abnormalities chromosomal imbalances and pathogenic copy number variants (pCNV). small size is optimal SNP genotyping fragmented DNA from fixed tissues. This retrospective study evaluated clinical utility O...

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