SUMMARY We developed a fast and accurate side-chain modeling program [Optimized Side Chain Atomic eneRgy (OSCAR)-star] based on orientation-dependent energy functions and a rigid rotamer model. The average computing time was 18 s per protein for 218 test proteins with higher prediction accuracy (1.1% increase for χ(1) and 0.8% increase for χ(1+2)) than the best performing program developed by o...

UNLABELLED The serial analysis of chromatin occupancy technique (SACO) promises to become a widely used method for the unbiased genome-wide experimental identification of loci bound by a transcription factor of interest. We describe the first web-based automatic tool, termed sequence tag analysis and reporting tool (START), for processing SACO data generated by experiments performed for the yea...

A growing body of work aims to understand the impacts of climate change on agriculture as well as farmer’s perceptions of climate change and their likeliness to adopt adapting and mitigating behaviors. Despite this, little work has considered how intention to adopt differs from actual adoption of climate change practices in agriculture. Applying the Theory of Planned Behavior we aim to assess w...

Food insecurity is associated with many poor health outcomes yet is not routinely addressed in clinical settings. The purpose of this study was to implement a food insecurity screening and referral program in Student-run Free Clinics (SRFC) and to document the prevalence of food insecurity screening in this low-income patient population. All patients seen in three SRFC sites affiliated with one...

In this Electronic Supplementary Material, we provide the mathematical details of the model simulations that are presented in the main article. We detail the model construction, underlying assumptions, and constitutive expressions for flows for the three food web models that are explored. In addition, we provide the analytical solutions for the steady state, and the results of the linear stabil...

UNLABELLED Java-Dotter (JDotter) is a platform-independent Java interactive interface for the Linux version of Dotter, a widely used program for generating dotplots of large DNA or protein sequences. JDotter runs as a client-server application and can send new sequences to the Dotter program for alignment as well as rapidly access a repository of preprocessed dotplots. JDotter also interfaces w...

Motivation Short Interspersed Nuclear Elements (SINEs) are transposable elements (TEs) that amplify through a copy-and-paste mode via RNA intermediates. The computational identification of new SINEs are challenging because of their weak structural signals and rapid diversification in sequences. Results Here we report SINE_Scan, a highly efficient program to predict SINE elements in genomic DN...

In December 1979, the number of persons receiving State supplementary payments under the Supplemental Security Income Program for the Aged, Blind, and Disabled totaled 1,942,000. By December 1981, the number totaled 1,875,000--a decline of 67,000 or 3 percent. This decrease paralleled the reduction in the number of persons receiving Federal Supplemental Security Income payments, which dropped f...

Complementary feeding (CF), which should begin after exclusive breastfeeding for six months, according to the World Health Organization (WHO), or after four months and before six months according to the European Society for Pediatric Gastroenterology Hepatology and Nutrition (ESPGHAN), is a period when the infant implicitly learns what, when, how, and how much to eat. At the onset of CF, the br...