نتایج جستجو برای: potential energy morse function ab initio

تعداد نتایج: 2726148  

2017
Wiktoria Jedwabny Joanna Panecka-Hofman Edyta Dyguda-Kazimierowicz Rebecca C. Wade W. Andrzej Sokalski

There is a need for improved and generally applicable scoring functions for fragment-based approaches to ligand design. Here, we evaluate the performance of a computationally efficient model for inhibitory activity estimation, which is composed only of multipole electrostatic energy and dispersion energy terms that approximate long-range ab initio quantum mechanical interaction energies. We fin...

2006
Sergei V. Shirin Oleg L. Polyansky Nikolai F. Zobov Roman I. Ovsyannikov Attila G. Császár Jonathan Tennyson

Adiabatic potential energy surfaces (PESs) for three major isotopologues of water, H2 O, H2 O, and H2 O, are constructed by fitting to observed vibration–rotation energy levels of the system using the nuclear motion program DVR3D employing an exact kinetic energy operator. Extensive tests show that the mass-dependent ab initio surfaces due to Polyansky et al. [O.L. Polyansky, A.G. Császár, S.V....

Journal: :The journal of physical chemistry. B 1998
A D MacKerell D Bashford M Bellott R L Dunbrack J D Evanseck M J Field S Fischer J Gao H Guo S Ha D Joseph-McCarthy L Kuchnir K Kuczera F T Lau C Mattos S Michnick T Ngo D T Nguyen B Prodhom W E Reiher B Roux M Schlenkrich J C Smith R Stote J Straub M Watanabe J Wiórkiewicz-Kuczera D Yin M Karplus

New protein parameters are reported for the all-atom empirical energy function in the CHARMM program. The parameter evaluation was based on a self-consistent approach designed to achieve a balance between the internal (bonding) and interaction (nonbonding) terms of the force field and among the solvent-solvent, solvent-solute, and solute-solute interactions. Optimization of the internal paramet...

Journal: :The journal of physical chemistry. A 2013
Riccardo Conte Paul L Houston Joel M Bowman

Predicting the results of collisions of polyatomic molecules with a bath of atoms is a research area that has attracted substantial interest in both experimental and theoretical chemistry. Energy transfer, which is the consequence of such collisions, plays an important role in gas-phase kinetics and relaxation of excited molecules. We present a study of energy transfer in single collisions of h...

1997
W. R. Gibbs

An ab initio potential for the interaction of the neutral helium atom with antiprotons and protons is calculated using the Born-Oppenheimer approximation. Using this potential, the annihilation cross section for antiprotons in the energy range 0.01 μeV to 1 eV is calculated.

Journal: :The journal of physical chemistry. A 2005
Deborah L Crittenden Keiran C Thompson Meredith J T Jordan

We investigate the quantum dynamical nature of hydrogen bonding in 1,2-ethanediol and monohydrated 1,2-ethanediol using different levels of ab initio theory. Global full-dimensional potential energy surfaces were constructed from PW91/cc-pVDZ, B3LYP/cc-pVDZ, and MP2/cc-pVDZ ab initio data for gas-phase and monohydrated 1,2-ethanediol, using a modified Shepard interpolation scheme. Zero-point en...

2005
Tim James David J. Wales Javier Hernández-Rojas

Candidate global minimum structures are reported for (H2O)n clusters for n 6 21 described by the rigid-body TIP5P potential. These structures are compared with previously published results for the related TIP4P potential, and with ab initio calculations at the MP2 level. The variation of the energy gap from the putative global minimum to the next-lowest structure as a function of system size is...

Journal: :The Journal of chemical physics 2014
Dmitry V Makhov William J Glover Todd J Martinez Dmitrii V Shalashilin

We present a new algorithm for ab initio quantum nonadiabatic molecular dynamics that combines the best features of ab initio Multiple Spawning (AIMS) and Multiconfigurational Ehrenfest (MCE) methods. In this new method, ab initio multiple cloning (AIMC), the individual trajectory basis functions (TBFs) follow Ehrenfest equations of motion (as in MCE). However, the basis set is expanded (as in ...

2002
Pavel Soldán Edmond P. F. Lee Timothy G. Wright

Close-coupling calculations of bound rotational and vibrational states are carried out on a new intermolecular potential energy function based on 200 energies of the He•NO cationic complex calculated at the coupled-cluster single double ~triple!/aug-cc-pV5Z ab initio level of theory at a range of geometries and point-by-point corrected for basis set superposition error. The potential energy fun...

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