L1 is a family of long interspersed repetitive sequences in mammals that includes the BamHI family in rodents and the KpnI family in primates. Previous studies have shown that L1 repeats contain a long open reading frame and that the family evolves in concert. Working with 32 rodent elements for which DNA sequence is available, we used the distribution of replacement and synonymous changes to d...

Over 3:6 million bases of DNA sequence from chromosome III of the C. elegans have been determined. The availability of this extended region of contiguous sequence has allowed us to analyze the nature and prevalence of repetitive sequences in the genome of a eukaryotic organism with a high gene density. We have assembled a Repeat Pattern Toolkit (RPT) to analyze the patterns of repeats occurring...

A repetitive DNA element was obtained from a crayfish genomic library while attempting to isolate the gene for the pigment concentrating hormone (PCH) with an oligonucleotide probe. The probe was directed to the coding region of the octapeptidic hormone deduced from the amino acid sequence of PCH (1). The isolated clone contained a 14 nucleotide sequence tandemly repeated 30 times; eleven nucle...

Rice bacterial artificial chromosome clones containing centromeric DNA were isolated by using a DNA sequence (pSau3A9) that is present in the centromeres of Gramineae species. Seven distinct repetitive DNA elements were isolated from a 75-kilobase rice bacterial artificial chromosome clone. All seven DNA elements are present in every rice centromere as demonstrated by fluorescence in situ hybri...

We performed a blinded study to compare repetitive-sequence PCR and multilocus sequence typing for genotyping hospital- and community-acquired methicillin-resistant Staphylococcus aureus (MRSA). The MRSA strains that were sequence type 8 (ST8), staphylococcal cassette chromosome mec (SCCmec) type IV, and Panton-Valentine leukocidin-positive clustered separately from those that were ST5 and SCCm...

The comparisons of 170 sequences of kinetoplast DNA minicircle hypervariable region obtained from 19 stocks of Trypanosoma cruzi and 2 stocks of Trypanosoma cruzi marenkellei showed that only 56% exhibited a significant homology one with other sequences. These sequences could be grouped into homology classes showing no significant sequence similarity with any other homology group. The 44% remai...

A repetitive sequence collection is a set of sequences which are small variations of each other. A prominent example are genome sequences of individuals of the same or close species, where the differences can be expressed by short lists of basic edit operations. Flexible and efficient data analysis on such a typically huge collection is plausible using suffix trees. However, the suffix tree occ...

Repetitive sequences of variable length are common in almost all eukaryotic genomes, and most of them are presumed to have important biomedical functions and can cause genomic instability. Next-generation sequencing (NGS) technologies provide the possibility of identifying capturing these repetitive sequences directly from the NGS data. In this study, we assessed the performances in identifying...

In this chapter, we investigate repetitive human activity patterns and individual recognition in thermal infrared imagery, where human motion can be easily detected from the background regardless of the lighting conditions and colors of the human clothing and surfaces, and backgrounds. We employ an efficient spatio-temporal representation for human repetitive activity and individual recognition...

background : although many studies have been performed on occupational and industrial musculoskeletal disorders in iran, small scale industries have been less studied and evaluated. the purpose of this study was to perform an ergonomic assessment of handicraft workers in isfahan, iran, using the assessment of repetitive tasks (art) tool in 2015. methods: this descriptive-analytical and cross-se...