نتایج جستجو برای: transcriptome

تعداد نتایج: 36537  

2017
Mark Carrington Eva Dóró Maria Forlenza Geert F Wiegertjes Steven Kelly

Here, we report a transcriptome sequence of Trypanoplasma borreli isolated from its natural host, the common carp, Cyprinus carpio The transcriptome allows an analysis of abundant cell surface proteins and acts as a comparator for understanding the evolution and pathogenicity of other Kinetoplastida, including several that infect humans.

2015
Sandeep Chakraborty Monica Britton Jill Wegrzyn Timothy Butterfield Pedro José Martínez-García Russell L. Reagan Basuthkar J. Rao Charles A. Leslie Mallikarjuna Aradhaya David Neale Keith Woeste Abhaya M. Dandekar Binay Panda Michael Love Sandeep Chakraborty Varodom Charoensawan

The transcriptome provides a functional footprint of the genome by enumerating the molecular components of cells and tissues. The field of transcript discovery has been revolutionized through high-throughput mRNA sequencing (RNA-seq). Here, we present a methodology that replicates and improves existing methodologies, and implements a workflow for error estimation and correction followed by geno...

2015
Zhong Quan Zhao Li Juan Wang Xiao Wei Sun Jiao Jiao Zhang Yong Ju Zhao Ri Su Na Jia Hua Zhang

BACKGROUND Capra hircus is an important economic livestock animal, and therefore, it is necessary to discover transcriptome information about their reproductive performance. In this study, we performed de novo transcriptome sequencing to produce the first transcriptome dataset for the goat ovary using high-throughput sequencing technologies. The result will contribute to research on goat reprod...

2017
Kok-Keong Loke Reyhaneh Rahnamaie-Tajadod Chean-Chean Yeoh Hoe-Han Goh Zeti-Azura Mohamed-Hussein Zamri Zainal Ismanizan Ismail Normah Mohd Noor

BACKGROUND Polygonum minus is an herbal plant in the Polygonaceae family which is rich in ethnomedicinal plants. The chemical composition and characteristic pungent fragrance of Polygonum minus have been extensively studied due to its culinary and medicinal properties. There are only a few transcriptome sequences available for species from this important family of medicinal plants. The limited ...

Journal: : 2022

The Single Nucleotide Polymorphisms (SNP) Discovery on Transcriptome of Pure Sistani and Cross-Breeding Holstein, Simmental Monte Billiard Bulls

2015
Xiaofeng Gu Tiegang Lu

A Commentary on Sequencing, de novo assembly and comparative analysis of Raphanus sativus transcriptome Obtaining sequence information for a plant species of interest greatly facilitates functional genomic research. However, many plant species have not been sequenced due to the complexities of their genomes and the high cost of sequencing. Therefore, the transcriptomes of several plants were se...

2016
Shiyong Mei Touming Liu Zhiwei Wang Jianhua Zhu

Radish cytoplasmic male sterility (CMS) has been widely used for breeding in Raphanus and Brassica genera. However, the detailed regulation network of the male sterility remains to be determined. Our previous work has shown that the abnormalities in a CMS radish appeared shortly after the tetrad stage when microspores were malformed and the tapetal cells grew abnormally large. In this work, his...

2013
Alexandre Augusto Pereira Firmino Fernando Campos de Assis Fonseca Leonardo Lima Pepino de Macedo Roberta Ramos Coelho José Dijair Antonino de Souza Jr Roberto Coiti Togawa Orzenil Bonfim Silva-Junior Georgios Joannis Pappas-Jr Maria Cristina Mattar da Silva Gilbert Engler Maria Fatima Grossi-de-Sa

Cotton plants are subjected to the attack of several insect pests. In Brazil, the cotton boll weevil, Anthonomus grandis, is the most important cotton pest. The use of insecticidal proteins and gene silencing by interference RNA (RNAi) as techniques for insect control are promising strategies, which has been applied in the last few years. For this insect, there are not much available molecular ...

2017
Jie Xin Rong-Chao Zhang Lei Wang Yong-Qing Zhang

Due to its incomparable advantages, the application of transcriptome sequencing in the study of traditional Chinese medicine attracts more and more attention of researchers, which greatly promote the development of traditional Chinese medicine. In this paper, the applications of transcriptome sequencing in traditional Chinese medicine were summarized by reviewing recent related papers.

2017

1. Scientific Introduction 2. Installation 3. Motivation 4. Retrieval of phylogenetic or taxonomic information 5. Defining input data standards 6. Performing a Standard Workflow for Evolutionary Transcriptomics Analyses 7. Statistical Assessment of Transcriptome Conservation Patterns 8. Details About Statistical Tests 9. Data Transformations and their Effects on Transcriptome Conservation Patterns

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