نتایج جستجو برای: comparative genomic hybridization

تعداد نتایج: 397000  

2015
George Tseng Debashis Ghosh Xianghong Jasmine Zhou

accelerated failure time (AFT) model, 227 accuracy quality control (AQCg; AQCp), MetaQC package, 41 aCGH (array comparative genomic hybridization), 333, 403 AD (Alzheimer’s disease), 102–103 adaptively weighted Fisher’s (AW-Fisher’s) method, 43 adjusted Rand index, 242 Affymetrix arrays, 400–401 AFT (accelerated failure time) model, 227 allele frequencies, comparison of, 14f allele-specific bin...

Journal: :The American journal of pathology 1994
M R Speicher B Schoell S du Manoir E Schröck T Ried T Cremer S Störkel A Kovacs G Kovacs

We analyzed 19 chromophobe renal cell carcinomas by means of comparative genomic hybridization. Two tumors revealed no numerical abnormalities. In the remaining 17 cases we found loss of entire chromosomes with underrepresentation of chromosome 1 occurring in all 17 cases; loss of chromosomes 2, 10, and 13 in 16 cases; loss of chromosomes 6 and 21 in 15 tumors; and loss of chromosome 17 in 13 c...

Journal: :Science 2008
Tom Walsh Jon M McClellan Shane E McCarthy Anjené M Addington Sarah B Pierce Greg M Cooper Alex S Nord Mary Kusenda Dheeraj Malhotra Abhishek Bhandari Sunday M Stray Caitlin F Rippey Patricia Roccanova Vlad Makarov B Lakshmi Robert L Findling Linmarie Sikich Thomas Stromberg Barry Merriman Nitin Gogtay Philip Butler Kristen Eckstrand Laila Noory Peter Gochman Robert Long Zugen Chen Sean Davis Carl Baker Evan E Eichler Paul S Meltzer Stanley F Nelson Andrew B Singleton Ming K Lee Judith L Rapoport Mary-Claire King Jonathan Sebat

Schizophrenia is a devastating neurodevelopmental disorder whose genetic influences remain elusive. We hypothesize that individually rare structural variants contribute to the illness. Microdeletions and microduplications >100 kilobases were identified by microarray comparative genomic hybridization of genomic DNA from 150 individuals with schizophrenia and 268 ancestry-matched controls. All va...

2014
Han Zheng Ruiting Lan Xiao Zheng Zhigang Cui Zhijie Liu Xuemei Bai Shaobo Ji Marcelo Gottschalk Jianguo Xu

Streptococcus suis is an important zoonotic pathogen. However, identification of virulent S. suis strains is complicated because of the high diversity of the species. Here we evaluated the genetic difference among S. suis strains using comparative genomic hybridization (CGH) and virulence variation in vivo and in vitro. We showed that different clades differed in their ability to activate TLR2/...

Journal: :Journal of clinical microbiology 2008
Nabil Arrach Steffen Porwollik Pui Cheng Ann Cho Fred Long Sang-Ho Choi Michael McClelland

There are more than 2,500 known Salmonella serovars, and some of these can be further subclassified into groups of strains that differ profoundly in their gene content. We refer to these groups of strains as "genovars." A compilation of comparative genomic hybridization data on 291 Salmonella isolates, including 250 S. enterica subspecies I strains from 32 serovars (52 genovars), was used to se...

Journal: :Gut microbes 2012
Eileen F O' Shea Paula M O' Connor Emma J Raftis Paul W O' Toole Catherine Stanton Paul D Cotter R Paul Ross Colin Hill

A recent comparative genomic hybridization study in our laboratory revealed considerable plasticity within the bacteriocin locus of gastrointestinal strains of Lactobacillus salivarius. Most notably, these analyses led to the identification of two novel unmodified bacteriocins, salivaricin L and salivaricin T, produced by the neonatal isolate L. salivarius DPC6488 with immunity, regulatory and ...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2012
Yoon-ha Lee Michael Ronemus Jude Kendall B Lakshmi Anthony Leotta Dan Levy Diane Esposito Vladimir Grubor Kenny Ye Michael Wigler Boris Yamrom

Genomic copy number variation underlies genetic disorders such as autism, schizophrenia, and congenital heart disease. Copy number variations are commonly detected by array based comparative genomic hybridization of sample to reference DNAs, but probe and operational variables combine to create correlated system noise that degrades detection of genetic events. To correct for this we have explor...

Journal: :Dalton transactions 2015
Kangqiang Qiu Bole Yu Huaiyi Huang Pingyu Zhang Liangnian Ji Hui Chao

To prolong the observation time, increase the penetration depth and decrease self-absorption and phototoxicity, two-photon luminescent vectors have emerged as promising tools for tracking gene delivery in living cells. Herein, we report four new tetranuclear Ru(ii) complexes based on oligo-oxyethylene and polybenzimidazole as one- and two- photon luminescent tracking non-viral gene vectors. In ...

Journal: :Human molecular genetics 2003
Donna G Albertson Daniel Pinkel

Alterations in the genome that lead to changes in DNA sequence copy number are a characteristic of solid tumors and are found in association with developmental abnormalities and/or mental retardation. Comparative genomic hybridization (CGH) can be used to detect and map these changes. Recent improvements in the resolution and sensitivity of CGH have been possible through implementation of micro...

Journal: :Human mutation 2010
Eric Pasmant Audrey Sabbagh Gill Spurlock Ingrid Laurendeau Elisa Grillo Marie-José Hamel Ludovic Martin Sébastien Barbarot Bruno Leheup Diana Rodriguez Didier Lacombe Hélène Dollfus Laurent Pasquier Bertrand Isidor Salah Ferkal Jean Soulier Marc Sanson Anne Dieux-Coeslier Ivan Bièche Béatrice Parfait Michel Vidaud Pierre Wolkenstein Meena Upadhyaya Dominique Vidaud

In 5-10% of patients, neurofibromatosis type 1 (NF1) results from microdeletions that encompass the entire NF1 gene and a variable number of flanking genes. Two recurrent microdeletion types are found in most cases, with microdeletion breakpoints located in paralogous regions flanking NF1 (proximal NF1-REP-a and distal NF1-REP-c for the 1.4 Mb type-1 microdeletion, and SUZ12 and SUZ12P for the ...

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