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BACKGROUND To analyze the longitudinal length accuracy of gross tumor volume (GTV) delineation with diffusion weighted magnetic resonance imaging for esophageal squamous cell carcinoma (SCC). METHODS Forty-two patients from December 2011 to June 2012 with esophageal SCC who underwent radical surgery were analyzed. Routine computed tomography (CT) scan, T2-weighted MRI and diffusion weighted m...
Optimal crop water requirement is needed for precise irrigation scheduling. Prediction of crop water requirements is a basic factor to achieve this goal. In this study, maize potential evapotranspiration (ETp) was prediced by maize simulation model (MSM). Then, it was evaluated and validated using experimental field data obtained in Agricultural Research Station of Shiraz University (Bajghah, F...
We tested different approaches to including the effect of binding-site water molecules for ligand-binding affinities within the MM/GBSA approach (molecular mechanics combined with generalised Born and surface-area solvation). As a test case, we studied the binding of nine phenol analogues to ferritin. The effect of water molecules mediating the interaction between the receptor and the ligand ca...
S. Aokib,g, M. Fukugita f , K.-I. Ishikawae, T. Ishikawab, N. Ishizukaa,b, Y. Iwasakib, K. Kanayab, Y. Kuramashia,b, M. Okawae, Y. Taniguchib, A. Ukawaa,b, N. Yamadac,d, T. Yoshié∗ a,b† a Center for Computational Sciences, University of Tsukuba, Tsukuba 305-8577, Japan b Graduate School of Pure and Applied Sciences, University of Tsukuba, Tsukuba 305-8571, Japan c High Energy Accelerator Resear...
Introduction: Objective: This study aimed to assess the possible variations in root canal anatomy and topography of the apices of first and second maxillary molars. Materials and methods: A total of 67 first and second maxillary permanent molars were collected. Access cavity was prepared and 2% methylene blue was injected. The teeth were demineralized by 5% nitric acid and cleared with met...
Binding free energies in the SAMPL6 octa-acid host–guest challenge calculated with MM and QM methods
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