نتایج جستجو برای: transcriptome assembly

تعداد نتایج: 158382  

2015
Yeonhwa Jo Hoseong Choi Ju-Yeon Yoon Seung-Kook Choi Won Kyong Cho

Grapevine yellow speckle viroid 1 (GYSVd1), which is a member of the genus Apscaviroid, causes yellow speckle disease in grapevines. Here, we report the complete de novo genome assembly of GYSVd1 from the grapevine transcriptome and identified 10 single nucleotide polymorphisms of GYSVd1 across the grapevine populations.

2017
Leilane O Gonçalves de Oliveira Luciana M C D’Ávila Pessoa Grasielle Aline CL Rosa Marinely G Bustamante Carlota J Belisário Daniela M Resende Lileia G Diotaiuti Jeronimo C Ruiz

Triatoma infestans is an insect of subfamily Triatominae (Hemiptera: Reduviidae) and an important vector of Trypanosoma cruzi, the etiologic agent of human Chagas disease. In this work we reported a transcriptome assembly and annotation of T. infestans heads obtained by Next Generation Sequencing (NGS) technologies.

2015
Yeonhwa Jo Hoseng Choi Won Kyong Cho

The genus Endornavirus is a double-stranded RNA virus that infects a wide range of hosts. In this study, we report on the de novo assembly of a bell pepper endornavirus genome sequence by RNA sequencing (RNA-Seq). Our result demonstrates the successful application of RNA-Seq to obtain a complete viral genome sequence from the transcriptome data.

Journal: :Bioinformatics 2012
Ken Chen John W. Wallis Cyriac Kandoth Joelle M. Kalicki-Veizer Karen L. Mungall Andrew J. Mungall Steven J. M. Jones Marco A. Marra Timothy J. Ley Elaine R. Mardis Richard K. Wilson John N. Weinstein Li Ding

UNLABELLED Despite recent progress, computational tools that identify gene fusions from next-generation whole transcriptome sequencing data are often limited in accuracy and scalability. Here, we present a software package, BreakFusion that combines the strength of reference alignment followed by read-pair analysis and de novo assembly to achieve a good balance in sensitivity, specificity and c...

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