نتایج جستجو برای: pcr using homologous primers

تعداد نتایج: 3564282  

Journal: :BioTechniques 2003
David Latorra Deborah Hopkins Krista Campbell J Michael Hurley

The ease and advantages of allelespecific PCR (AS-PCR) for SNP genotyping, along with the difficulty of assay specificity with certain mismatched DNA primers, have been described in prior studies (1–3). More recently, the use of real-time PCR detection formats has been described for one or both alleles of AS-PCR (4–6). These detection enhancement methods do not overcome the inherent difficultie...

Journal: :DNA research : an international journal for rapid publication of reports on genes and genomes 2000
K Nishigaki K Akasaka A Hasegawa

We propose a genome sequencing strategy, which is neither divide-and-conquer (clone by clone) nor the shotgun approach. Random PCR-based and PCR relay sequencing constitute the basis of this novel strategy. Most of the genome is sequenced by the former process that requires only a set of non-specific primers and a template DNA. Random PCR-based sequencing reduces redundancy in sequencing by exp...

Journal: :Journal of medical virology 2009
Ruth Harbecke Michael N Oxman Beth A Arnold Charlotte Ip Gary R Johnson Myron J Levin Lawrence D Gelb Kenneth E Schmader Stephen E Straus Hui Wang Peter F Wright Constance T Pachucki Anne A Gershon Robert D Arbeit Larry E Davis Michael S Simberkoff Adriana Weinberg Heather M Williams Carol Cheney Luba Petrukhin Katalin G Abraham Alan Shaw Susan Manoff Joseph M Antonello Tina Green Yue Wang Charles Tan Paul M Keller

A real-time PCR assay was developed to identify varicella-zoster virus (VZV) and herpes simplex virus (HSV) DNA in clinical specimens from subjects with suspected herpes zoster (HZ; shingles). Three sets of primers and probes were used in separate PCR reactions to detect and discriminate among wild-type VZV (VZV-WT), Oka vaccine strain VZV (VZV-Oka), and HSV DNA, and the reaction for each virus...

Journal: :Asian Pacific journal of allergy and immunology 2009
Woradee Lurchachaiwong Pairoj Junyangdikul Sunchai Payungporn Jira Chansaenroj Pichet Sampatanukul Damrong Tresukosol Wichai Termrungruanglert Yong Poovorawan

The hybrid capture II (HCII) assay is widely used in the detection of human papillomavirus virus (HPV). However, due to the limited number of HPV genotypes, it does not permit a comprehensive typing of viruses and "grey zone" (borderline negative or positive results) are often difficult to interpret. As such, polymerase chain reaction (PCR) should be used in parallel with HCII assays, and conse...

Journal: :Epigenetics 2009
Tomasz K Wojdacz Tanni Borgbo Lise Lotte Hansen

Many protocols in methylation studies utilize one primer set to generate a PCR product from bisulfite modified template regardless of its methylation status (methylation independent amplification MIP). However, proportional amplification of methylated and unmethylated alleles is hard to achieve due to PCR bias favoring amplification of unmethylated relatively GC poor sequence. Two primer design...

Journal: :Analytical biochemistry 2003
Brian Lowe Herbert A Avila Fredric R Bloom Martin Gleeson Wolfgang Kusser

Quantitative RT-PCR using LUX primers was performed to determine the expression patterns of various transcripts in samples of pluripotent, mouse P-19 stem cells. The P-19 cells were used because they transform into neuron-like cells upon retinoic acid treatment. The expression of neural and stem cell genes, including GLUR1, GABA-B1a, NMDA1, GAP-43, ChAT, BDNF, nestin, BMP-2, BMP-4, and EGR1, wa...

1999
G. R. Bertani N. J. Larsen S. Marklund Z. L. Hu M. F. Rothschild

Source and Description of Primers. The initial primers for the PCR were designed based on human DNA sequence (accession no. X92412; Kolmerer et al., 1996). The position of the forward and reverse primers corresponded to exon 3 and exon 5, respectively. These primers are expected to amplify a fragment of 1.93 kb from human DNA. A PCR fragment of 2.1 kb was amplified from porcine genomic DNA. Par...

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