نتایج جستجو برای: selectivity modeling

تعداد نتایج: 433956  

2012
Alexandra Vaisman Wojciech Kuban John P. McDonald Kiyonobu Karata Wei Yang Myron F. Goodman Roger Woodgate

The active form of Escherichia coli DNA polymerase V responsible for damage-induced mutagenesis is a multiprotein complex (UmuD'(2)C-RecA-ATP), called pol V Mut. Optimal activity of pol V Mut in vitro is observed on an SSB-coated single-stranded circular DNA template in the presence of the β/γ complex and a transactivated RecA nucleoprotein filament, RecA*. Remarkably, under these conditions, w...

2009
Junqiang Liu Tae-Hyun Bae Wulin Qiu Shabbir Husain Sankar Nair Christopher W. Jones Ronald R. Chance William J. Koros

For the first time, we report the C4s’ transport properties: solubility, diffusivity, permeability in 6FDA–DAM polymer, one of most permeable glassy polymers with significant nC4 vs. iC4 selectivity. An nC4 permeability of 3.7 Barrer, and nC4/iC4 ideal selectivity of 21 was found in pure 6FDA–DAM polymer membrane. Mixed matrix films were successfully fabricated using a 6FDA–DAM as the matrix, w...

Journal: :Molecular pharmacology 2007
Qiaolin Deng Joseph A Clemas Gary Chrebet Paul Fischer Jeffrey J Hale Zhen Li Sander G Mills James Bergstrom Suzanne Mandala Ralph Mosley Stephen A Parent

Sphingosine-1-phosphate (S1P) receptor agonists are novel immunosuppressive agents. The selectivity of S1P1 against S1P3 is strongly correlated with lymphocyte sequestration and minimum acute toxicity and bradycardia. This study describes molecular modeling, site-directed mutagenesis, and affinity studies exploring the molecular basis for selectivity between S1P1 and S1P3 receptors. Computation...

Journal: :Biophysical journal 2014
David Shirvanyants Srinivas Ramachandran Yingwu Mei Le Xu Gerhard Meissner Nikolay V Dokholyan

Ryanodine receptors (RyR) are calcium release channels, playing a major role in the regulation of muscular contraction. Mutations in skeletal muscle RyR (RyR1) are associated with congenital diseases such as malignant hyperthermia and central core disease (CCD). The absence of high-resolution structures of RyR1 has limited our understanding of channel function and disease mechanisms at the mole...

Journal: :The Journal of General Physiology 2003
Karel Talavera Annelies Janssens Norbert Klugbauer Guy Droogmans Bernd Nilius

The selectivity filter of all known T-type Ca2+ channels is built by an arrangement of two glutamate and two aspartate residues, each one located in the P-loops of domains I-IV of the alpha1 subunit (EEDD locus). The mutations of the aspartate residues to glutamate induce changes in the conduction properties, enhance Cd2+ and proton affinities, and modify the activation curve of the channel. He...

2015
Tasha Nagamine Michael L. Seltzer Nima Mesgarani

Deep neural networks (DNNs) have become the dominant technique for acoustic-phonetic modeling due to their markedly improved performance over other models. Despite this, little is understood about the computation they implement in creating phonemic categories from highly variable acoustic signals. In this paper, we analyzed a DNN trained for phoneme recognition and characterized its representat...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2010
Anne Brockhoff Maik Behrens Masha Y Niv Wolfgang Meyerhof

An important question in taste research is how 25 receptors of the human TAS2R family detect thousands of structurally diverse compounds. An answer to this question may arise from the observation that TAS2Rs in general are broadly tuned to interact with numerous substances. Ultimately, interaction with chemically diverse agonists requires architectures of binding pockets tailored to combine fle...

Journal: :journal of physical & theoretical chemistry 2010
m. vadi

the catalyst pt-ta supported on 7-alumina was prepared by impregnation with solution containing compoundsof ii21k1.0. and ta205 the pt concentration was kept constant at 0.2 vet% while the concentration of thetantalum was 0,4 wt%. the activity and selectivity of catalyst were determined under conditions at 450-500 °cand 15-30 atm.. with molar ratio h2/c[h,e5 and wh=1.5ml/h for converted n-hepta...

2011
Johannes Schmidt Nicola J. Smith Elisabeth Christiansen Irina G. Tikhonova Manuel Grundmann Brian D. Hudson Richard J. Ward Christel Drewke Graeme Milligan Evi Kostenis Trond Ulven

Free fatty acid receptor 2 (FFA2; GPR43) is a G protein-coupled seven-transmembrane receptor for short-chain fatty acids (SCFAs) that is implicated in inflammatory and metabolic disorders. The SCFA propionate has close to optimal ligand efficiency for FFA2 and can hence be considered as highly potent given its size. Propionate, however, does not discriminate between FFA2 and the closely related...

Journal: :The Journal of pharmacology and experimental therapeutics 2005
James M Sanders Koichi Ito Luca Settimo Olli T Pentikäinen Muneo Shoji Makoto Sasaki Mark S Johnson Ryuichi Sakai Geoffrey T Swanson

Kainate receptors show a particular affinity for a variety of natural source compounds, including dysiherbaine (DH), a potent agonist derived from the marine sponge Dysidea herbacea. In this study, we characterized the pharmacological activity and structural basis for subunit selectivity of neodysiherbaine (neoDH) and MSVIII-19, which are natural and synthetic analogs of DH, respectively. NeoDH...

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