نتایج جستجو برای: and coπ stacking interactions

تعداد نتایج: 16869577  

Journal: :Physical Chemistry Chemical Physics 2021

Correction for ‘A computational probe granting insight into intra and inter-stacking interactions in squaraine dye derivatives’ by Krishna Chaitanya Gunturu et al. , Phys. Chem. 2021, DOI: 10.1039/D1CP01387D.

Journal: :The journal of physical chemistry. B 2017
Yong-Lei Wang Aatto Laaksonen Michael D Fayer

Intermolecular features like hydrogen bonding and π-type interactions play pivotal roles in stabilizing molecular structures in ionic liquids with planar rings and hydrogen-bond donors and acceptors. However, the delicate interplay among these interactions is complicated and depends on specific ion types. In this work, ab initio molecular dynamics simulations were performed to reveal competitiv...

2016
Yasuaki Kabe Takanori Nakane Ikko Koike Tatsuya Yamamoto Yuki Sugiura Erisa Harada Kenji Sugase Tatsuro Shimamura Mitsuyo Ohmura Kazumi Muraoka Ayumi Yamamoto Takeshi Uchida So Iwata Yuki Yamaguchi Elena Krayukhina Masanori Noda Hiroshi Handa Koichiro Ishimori Susumu Uchiyama Takuya Kobayashi Makoto Suematsu

Progesterone-receptor membrane component 1 (PGRMC1/Sigma-2 receptor) is a haem-containing protein that interacts with epidermal growth factor receptor (EGFR) and cytochromes P450 to regulate cancer proliferation and chemoresistance; its structural basis remains unknown. Here crystallographic analyses of the PGRMC1 cytosolic domain at 1.95 Å resolution reveal that it forms a stable dimer through...

Journal: :Physical chemistry chemical physics : PCCP 2011
José P Cerón-Carrasco José Zúñiga Alberto Requena Eric A Perpète Catherine Michaux Denis Jacquemin

In DNA, base pairs are involved in two reciprocal interactions: interbase hydrogen bonds and stacking. Furthermore, base pairs also undergo the effects of the external entities present in the biological environment, such as water molecules and cations. In this contribution, the double spontaneous mutation has been studied with hybrid theoretical tools in a DNA-embedded guanine-cytosine model ac...

2012
Jian-Chen Geng Cui-Huan Jiao Jin-Ming Hao Guang-Hua Cui

Three flexible α,ω-bis(5,6-dimethylbenzimidazolyl)alkane ligands with different spacers were reacted with CdX2 (X = Cl, Br, I) hydrothermally, resulting in three coordination architectures, namely [CdI2(L)]n (1), [CdBr2(L)]n (2), and Cd2Cl4(L)2 (3) [L1 = 1,3-bis(5,6dimethylbenzimidazole)propane, L2 = 1,5-bis(5,6-dimethylbenzimidazole)pentane, L3 = 1,6bis(5,6-dimethylbenzimidazole)hexane]. They ...

2010
Ella Czarina Magat Juan Satoru Shimizu Xiao Ma Taizo Kurose Tsuyoshi Haraguchi Fang Zhang Masaru Tsunoda Akihiro Ohkubo Mitsuo Sekine Takayuki Shibata Christopher L. Millington David M. Williams Akio Takénaka

The incorporation of the bicyclic cytosine analogue 7,8-dihydropyrido[2,3-d]pyrimidin-2-one (X) into DNA duplexes results in a significant enhancement of their stability (3-4 K per modification). To establish the effects of X on the local hydrogen-bonding and base stacking interactions and the overall DNA conformation, and to obtain insights into the correlation between the structure and stabil...

Journal: :Physical chemistry chemical physics : PCCP 2014
Muthuramalingam Prakash Kévin Mathivon David M Benoit Gilberte Chambaud Majdi Hochlaf

Using first principle methodologies, we investigate the subtle competition between σ H-bond and π stacking interaction between CO2 and imidazole either isolated, adsorbed on a gold cluster or adsorbed on a gold surface. These computations are performed using MP2 as well as dispersion corrected density functional theory (DFT) techniques. Our results show that the CO2 interaction goes from π-type...

2010
Ildiko Pecsi Ibolya Leveles Veronika Harmat Beata G. Vertessy Judit Toth

Aromatic interactions are well-known players in molecular recognition but their catalytic role in biological systems is less documented. Here, we report that a conserved aromatic stacking interaction between dUTPase and its nucleotide substrate largely contributes to the stabilization of the associative type transition state of the nucleotide hydrolysis reaction. The effect of the aromatic stac...

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