نتایج جستجو برای: dna methylation

تعداد نتایج: 527260  

Journal: :Genes & development 2008
Keyur K Adhvaryu Eric U Selker

Covalent modifications of histones integrate intracellular and extracellular cues to regulate the genome. H3 Lys 9 methylation (H3K9me) can direct heterochromatin formation and DNA methylation, while phosphorylation of H3 Ser 10 (H3S10p) drives gene activation and chromosome condensation. To examine the relationship between H3S10p, H3K9me, and DNA methylation in Neurospora crassa, we built and ...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2009
Jia-Lei Hu Bo O Zhou Run-Rui Zhang Kang-Ling Zhang Jin-Qiu Zhou Guo-Liang Xu

DNA methylation and histone modification are two major epigenetic pathways that interplay to regulate transcriptional activity and other genome functions. Dnmt3L is a regulatory factor for the de novo DNA methyltransferases Dnmt3a and Dnmt3b. Although recent biochemical studies have revealed that Dnmt3L binds to the tail of histone H3 with unmethylated lysine 4 in vitro, the requirement of chro...

2011
Max Felle Helen Hoffmeister Julia Rothammer Andreas Fuchs Josef H. Exler Gernot Längst

Positioned nucleosomes limit the access of proteins to DNA. However, the impact of nucleosomes on DNA methylation in vitro and in vivo is poorly understood. Here, we performed a detailed analysis of nucleosome binding and nucleosomal DNA methylation by the de novo methyltransferases. We show that compared to linker DNA, nucleosomal DNA is largely devoid of CpG methylation. ATP-dependent chromat...

Journal: :Oncology reports 2008
Jinsheng Yu Robert R Freimuth Robert Culverhouse Sharon Marsh Mark A Watson Howard L McLeod

The methylation status of a gene promoter is considered to be an important mechanism for the development of many tumors, including colorectal cancer. Recent studies have shown that specific patterns of DNA methylation across multiple CpG loci in some human tumors are more informative than the detection of one single CpG locus in tumor genomes. In the present study, multiple CpG methylations of ...

Journal: :Genome instability & disease 2022

Abstract Cells are often under attack from various DNA-damaging agents. Accurate repair is required to protect cells the genome instability induced by DNA lesions. damage response (DDR) signaling involves sensitizing, transmitting, and repairing different types of within chromatin complexes. Chromatin a highly ordered complex packed with repeating units nucleosomes linker sequences. structure, ...

Journal: :Rossijskij žurnal detskoj gematologii i onkologii 2023

Currently, the daily routine of a molecular pathologist is DNA methylation and RNA sequencing. The authors, from standpoint researchers clinicians, explain methods used not only to diagnose brain tumors, but also search for possible targets therapy.

2016
Kenichi Nakamura Yoshifumi Baba Keisuke Kosumi Kazuto Harada Hironobu Shigaki Keisuke Miyake Yuki Kiyozumi Mayuko Ohuchi Junji Kurashige Takatsugu Ishimoto Masaaki Iwatsuki Yasuo Sakamoto Naoya Yoshida Masayuki Watanabe Mitsuyoshi Nakao Hideo Baba

BACKGROUND Global DNA hypomethylation contributes to oncogenesis through various mechanisms. The level of long interspersed nucleotide element-1 (LINE- 1) methylation is considered a surrogate marker of global DNA methylation, and is attracting interest as a good predictor of cancer prognosis. However, the mechanism how LINE-1 (global DNA) methylation is controlled in cancer cells remains to be...

Journal: :Genome research 2012
Agustin F Fernandez Yassen Assenov Jose Ignacio Martin-Subero Balazs Balint Reiner Siebert Hiroaki Taniguchi Hiroyuki Yamamoto Manuel Hidalgo Aik-Choon Tan Oliver Galm Isidre Ferrer Montse Sanchez-Cespedes Alberto Villanueva Javier Carmona Jose V Sanchez-Mut Maria Berdasco Victor Moreno Gabriel Capella David Monk Esteban Ballestar Santiago Ropero Ramon Martinez Marta Sanchez-Carbayo Felipe Prosper Xabier Agirre Mario F Fraga Osvaldo Graña Luis Perez-Jurado Jaume Mora Susana Puig Jaime Prat Lina Badimon Annibale A Puca Stephen J Meltzer Thomas Lengauer John Bridgewater Christoph Bock Manel Esteller

Most of the studies characterizing DNA methylation patterns have been restricted to particular genomic loci in a limited number of human samples and pathological conditions. Herein, we present a compromise between an extremely comprehensive study of a human sample population with an intermediate level of resolution of CpGs at the genomic level. We obtained a DNA methylation fingerprint of 1628 ...

Journal: :Current Biology 2003
Bernhard Lehnertz Yoshihide Ueda Alwin A.H.A. Derijck Ulrich Braunschweig Laura Perez-Burgos Stefan Kubicek Taiping Chen En Li Thomas Jenuwein Antoine H.F.M. Peters

BACKGROUND Histone H3 lysine 9 (H3-K9) methylation and DNA methylation are characteristic hallmarks of mammalian heterochromatin. H3-K9 methylation was recently shown to be a prerequisite for DNA methylation in Neurospora crassa and Arabidopsis thaliana. Currently, it is unknown whether a similar dependence exists in mammalian organisms. RESULTS Here, we demonstrate a physical and functional ...

2010
Mansour S. Al-Moundhri Maryam Al-Nabhani Letizia Tarantini Andrea Baccarelli Jennifer A. Rusiecki

BACKGROUND Epigenetics, particularly DNA methylation, has recently been elucidated as important in gastric cancer (GC) initiation and progression. We investigated the clinical and prognostic importance of whole blood global and site-specific DNA methylation in GC. METHODS Genomic DNA was extracted from the peripheral blood of 105 Omani GC patients at diagnosis. DNA methylation was quantified ...

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