نتایج جستجو برای: flexibility solvation free energy

تعداد نتایج: 1196552  

Journal: :The journal of physical chemistry. B 2007
Rajib Kumar Mitra Sudarson Sekhar Sinha Samir Kumar Pal

In recent years, the validity of the activation energy barrier crossing model at the micellar surface brings notable controversy (Sen, P.; Mukherjee, S.; Halder, A.; Bhattacharyya, K. Chem. Phys. Lett. 2004, 385, 357-361. Kumbhakar, M.; Goel, T.; Mukherjee, T.; Pal, H. J. Phys. Chem. B 2004, 108, 19246-19254.) in the literature. In order to check the validity of the model by time-resolved solva...

Journal: :The Journal of chemical physics 2006
Yohichi Suzuki Yoshitaka Tanimura

Ionic solvation in a polar solvent is modeled by a central charge surrounded by dipolar molecules posted on two-dimensional distorted lattice sites with simple rotational dynamics. Density of states is calculated by applying the Wang-Landau algorithm to both the energy and polarization states. The free energy landscapes of solvent molecules as a function of polarization are depicted to explore ...

Journal: :Journal of computational chemistry 2002
Brian N. Dominy Charles L. Brooks

As the field of structural genomics matures, new methods will be required that can accurately and rapidly distinguish reliable structure predictions from those that are more dubious. We present a method based on the CHARMM gas phase implicit hydrogen force field in conjunction with a generalized Born implicit solvation term that allows one to make such discrimination. We begin by analyzing pair...

Journal: :international journal of robotics 0
payam zarafshan department of agro-technology, college of aburaihan, university of tehran, pakdasht, tehran, iran ali a. moosavian center of excellence in robotics and control, advanced robotics and automated systems lab, department of mechanical engineering, k. n. toosi university of technology, tehran, iran

cooperative object manipulation control of rigid-flexible multi-body systems in space is studied in this paper. during such tasks, flexible members like solar panels may get vibrated that in turn may lead to some oscillatory disturbing forces on other subsystems, and consequently produces error in the motion of the end-effectors of the cooperative manipulating arms. therefore, to design and dev...

Journal: :Journal of computational chemistry 2008
Jian-Yi Ma Jing-Bo Wang Xiang-Yuan Li Yao Huang Quan Zhu Ke-Xiang Fu

In this work, a numerical procedure based on the continuum model is developed and applied to the solvation energy for ground state and the spectral shift against the position and the orientation of the interfacial molecule. The interface is described as a sharp boundary separating two bulk media. The polarizable continuum model (PCM) allows us to account for both electrostatic and nonelectrosta...

Journal: :Physical review. E, Statistical, nonlinear, and soft matter physics 2002
Rosa Ramirez Ralph Gebauer Michel Mareschal Daniel Borgis

In the density functional theory formulation of molecular solvents, the solvation free energy of a solute can be obtained directly by minimization of a functional, instead of the thermodynamic integration scheme necessary when using atomistic simulations. In the homogeneous reference fluid approximation, the expression of the free-energy functional relies on the direct correlation function of t...

2017
Timothy T Duignan Marcel D Baer Gregory K Schenter Christopher J Mundy

Single ion solvation free energies are one of the most important properties of electrolyte solutions and yet there is ongoing debate about what these values are. Only the values for neutral ion pairs are known. Here, we use DFT interaction potentials with molecular dynamics simulation (DFT-MD) combined with a modified version of the quasi-chemical theory (QCT) to calculate these energies for th...

Journal: :iranian journal of chemistry and chemical engineering (ijcce) 2008
mohammad reza hadjmohammadi mohammad javad chaichi maryam yousefpour

the solvatochromism of fluoresceine and its derivatives was studied in solvents of different hydrogen bond donor (hbd), hydrogen bond acceptor (hba), donor number (dn) and acceptor number (an) by their uv-vis spectra. results showed that position, intensity and shape of absorption bands change with type of solvent. these changes can be rationalized by solvatochromic parameters such as α, β, et ...

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