Duplication-Transfer-Loss (DTL) reconciliation is a powerful and increasingly popular technique for studying the evolution of microbial gene families. DTL reconciliation requires the use of rooted gene trees to perform the reconciliation with the species tree, and the standard technique for rooting gene trees is to assign a root that results in minimum reconciliation cost across all rootings of...

The Internet Domain Name System (DNS) is a hierarchical name space that enables the assignment of unique, mnemonic identifiers to Internet hosts and the consistent mapping of these names to IP addresses. The root of the domain name system is the top of the hierarchy and is currently managed by a quasi-private centralized regulatory authority, the Internet Corporation for Assigned Names and Numb...

Two nuclear genes, Nic1 and Nic2, regulate nicotine levels in tobacco. nic1 and nic2 are semidominant mutations in Burley 21 that reduce leaf nicotine levels and the activities of multiple enzymes in the nicotine pathway and simultaneously increase polyamine levels in cultured roots. Cultured roots homozygous for both mutations were used to isolate two cDNAs by subtraction hybridization; the tr...

We prove formulas for the k-higher Mahler measure of a family of rational functions with an arbitrary number of variables. Our formulas reveal relations with multiple polylogarithms evaluated at certain roots of unity.

In this paper, we present and analyse fourth order method for finding simultaneously multiple zeros of polynomial equations. S. M. Ilič and L. Rančič modified cubically convergent Ehrlich Aberth method to fourth order for the simultaneous determination of simple zeros [5]. We generalize this method to the case of multiple zeros of complex polynomial equations. It is proved that the method has f...

BACKGROUND AND AIMS Fractal analysis allows calculation of fractal dimension, fractal abundance and lacunarity. Fractal analysis of plant roots has revealed correlations of fractal dimension with age, topology or genotypic variation, while fractal abundance has been associated with root length. Lacunarity is associated with heterogeneity of distribution, and has yet to be utilized in analysis o...

Understanding the root distribution of trees by soil coring is time -: consuming as it requires the separation of roots from soil and classification of roots into particular size classes. This labour-intensive process can limit sample throughput and therefore sampling intensity. We investigated the use of quantitative polymerase chain reaction (qPCR) on soil DNA extractions to determine live fi...